Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATP7A_chrX_77905693_78055395	0/0	t0007	3990	9	8	1	0	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	t0008	3990	6	6	0	0	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	t0009	3990	5	3	2	0	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	t0010	3990	3	3	0	0	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	t0011	3987	2	0	0	2	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	t0012	3993	1	0	0	1	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	t0013	3992	1	0	1	0	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	t0014	4015	1	0	0	1	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	t0015	3995	1	1	0	0	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	t0016	3991	1	1	0	0	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	t0017	3991	1	0	0	1	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	t0018	3991	1	0	0	1	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	t0019	3988	1	0	1	0	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	t0020	3990	1	1	0	0	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	t0021	3990	1	0	0	1	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	t0022	3990	1	0	0	0	0	1	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	t0023	3996	1	1	0	0	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	t0024	3990	1	0	0	1	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	t0025	3989	1	0	1	0	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	t0026	4021	1	0	0	1	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	t0027	3990	1	0	0	0	0	1	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	t0028	3990	1	1	0	0	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	t0029	3990	1	1	0	0	0	0	copy fasta	ATP7A	chrX	77905693	78055395
ATP7B_chr13_51927669_52016450	1/1	t0001	2201	101	33	16	33	1	16	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	t0002	2201	70	3	22	31	2	12	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	t0003	2201	31	4	7	16	2	2	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	t0004	2201	26	2	11	8	1	4	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	t0005	2201	16	13	2	0	0	1	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	t0006	2201	16	16	0	0	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	t0007	2201	8	7	1	0	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	t0008	2201	7	4	0	3	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	t0009	2201	4	4	0	0	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	t0010	2201	3	0	1	0	1	1	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	t0011	2201	3	2	1	0	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	t0012	2201	2	0	0	2	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	t0013	2201	2	2	0	0	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	t0014	2201	2	0	2	0	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	t0015	2201	2	0	0	0	1	1	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	t0016	2201	1	0	0	0	0	1	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	t0017	2201	1	1	0	0	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	t0018	2201	1	0	0	0	0	1	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	t0019	2201	1	0	0	1	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	t0020	2201	1	0	0	0	0	1	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	t0021	2201	1	0	1	0	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	t0022	2201	1	0	1	0	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	t0023	2201	1	1	0	0	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP7B_chr13_51927669_52016450	0/0	t0024	2201	1	0	1	0	0	0	copy fasta	ATP7B	chr13	51927669	52016450
ATP8A1_chr4_42403373_42662105	0/1	t0001	4776	54	2	9	35	2	5	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	t0002	4776	36	13	10	7	0	6	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	t0003	4776	35	5	12	13	3	2	copy fasta	ATP8A1	chr4	42403373	42662105