JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PSAPL1_chr4_7425285_7439930	0/0	t0018	3077	3	3	0	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0019	3077	3	0	0	0	3	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0020	3077	3	0	2	0	0	1	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0021	3082	2	0	0	0	2	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0022	3082	2	0	0	0	0	2	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0023	3077	2	0	0	2	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0024	3077	2	0	0	2	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0025	3081	2	2	0	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0026	3081	2	2	0	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0027	3077	2	1	1	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0028	3081	1	1	0	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0029	3081	1	1	0	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0030	3078	1	0	0	1	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0031	3082	1	0	0	1	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0032	3082	1	0	0	1	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0033	3082	1	0	0	1	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0034	3030	1	0	0	1	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0035	3082	1	0	0	1	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0036	3082	1	0	0	1	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0037	3082	1	0	0	1	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0038	3078	1	1	0	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0039	3078	1	0	0	1	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0040	3081	1	0	0	1	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0041	3082	1	0	0	1	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0042	3082	1	1	0	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0043	3078	1	1	0	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0044	3078	1	0	0	1	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0045	3082	1	0	0	1	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0046	3082	1	0	0	1	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0047	3077	1	0	0	1	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0048	3077	1	0	0	1	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0049	3077	1	0	0	0	0	1	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0050	3077	1	1	0	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0051	3077	1	0	1	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0052	3077	1	1	0	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0053	3077	1	0	0	0	0	1	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0054	3081	1	0	0	1	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0055	3081	1	0	0	0	0	1	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0056	3077	1	0	0	1	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0057	3076	1	0	0	1	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0058	3077	1	0	0	0	1	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0059	3082	1	1	0	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0060	3077	1	1	0	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0061	3081	1	1	0	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0062	3081	1	1	0	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0063	3081	1	1	0	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0064	3081	1	0	0	1	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0065	3077	1	0	0	1	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0066	3077	1	0	1	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0067	3081	1	0	1	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930