JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PSAPL1_chr4_7425285_7439930	0/0	t0068	3076	1	0	0	1	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0069	3077	1	0	0	1	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAP_chr10_71811298_71856251	1/1	t0001	1174	195	39	33	84	7	30	copy fasta	PSAP	chr10	71811298	71856251
PSAP_chr10_71811298_71856251	0/0	t0002	1174	145	44	27	65	2	7	copy fasta	PSAP	chr10	71811298	71856251
PSAP_chr10_71811298_71856251	0/0	t0003	1174	68	1	9	49	4	5	copy fasta	PSAP	chr10	71811298	71856251
PSAP_chr10_71811298_71856251	0/0	t0004	1174	8	8	0	0	0	0	copy fasta	PSAP	chr10	71811298	71856251
PSAP_chr10_71811298_71856251	0/0	t0005	1174	5	3	2	0	0	0	copy fasta	PSAP	chr10	71811298	71856251
PSAP_chr10_71811298_71856251	0/0	t0006	1174	3	1	0	2	0	0	copy fasta	PSAP	chr10	71811298	71856251
PSAP_chr10_71811298_71856251	0/0	t0007	1174	2	1	1	0	0	0	copy fasta	PSAP	chr10	71811298	71856251
PSAP_chr10_71811298_71856251	0/0	t0008	1174	1	1	0	0	0	0	copy fasta	PSAP	chr10	71811298	71856251
PSAP_chr10_71811298_71856251	0/0	t0009	1174	1	1	0	0	0	0	copy fasta	PSAP	chr10	71811298	71856251
PSAP_chr10_71811298_71856251	0/0	t0010	1174	1	0	0	0	1	0	copy fasta	PSAP	chr10	71811298	71856251
PSAP_chr10_71811298_71856251	0/0	t0011	1174	1	1	0	0	0	0	copy fasta	PSAP	chr10	71811298	71856251
PSAT1_chr9_78292125_78335093	0/1	t0001	1094	261	52	46	124	13	25	copy fasta	PSAT1	chr9	78292125	78335093
PSAT1_chr9_78292125_78335093	1/0	t0002	1094	105	7	16	58	3	20	copy fasta	PSAT1	chr9	78292125	78335093
PSAT1_chr9_78292125_78335093	0/0	t0003	1094	26	16	9	0	0	1	copy fasta	PSAT1	chr9	78292125	78335093
PSAT1_chr9_78292125_78335093	0/0	t0004	1094	12	11	1	0	0	0	copy fasta	PSAT1	chr9	78292125	78335093
PSAT1_chr9_78292125_78335093	0/0	t0005	1094	4	3	1	0	0	0	copy fasta	PSAT1	chr9	78292125	78335093
PSAT1_chr9_78292125_78335093	0/0	t0006	1094	3	2	1	0	0	0	copy fasta	PSAT1	chr9	78292125	78335093
PSAT1_chr9_78292125_78335093	0/0	t0007	1094	1	1	0	0	0	0	copy fasta	PSAT1	chr9	78292125	78335093
PSAT1_chr9_78292125_78335093	0/0	t0008	1094	1	1	0	0	0	0	copy fasta	PSAT1	chr9	78292125	78335093
PSAT1_chr9_78292125_78335093	0/0	t0009	1094	1	1	0	0	0	0	copy fasta	PSAT1	chr9	78292125	78335093
PSAT1_chr9_78292125_78335093	0/0	t0010	1094	1	1	0	0	0	0	copy fasta	PSAT1	chr9	78292125	78335093
PSAT1_chr9_78292125_78335093	0/0	t0011	1094	1	1	0	0	0	0	copy fasta	PSAT1	chr9	78292125	78335093
PSCA_chr8_142675495_142687725	1/0	t0001	638	213	49	32	95	6	30	copy fasta	PSCA	chr8	142675495	142687725
PSCA_chr8_142675495_142687725	0/1	t0002	638	207	26	36	120	10	14	copy fasta	PSCA	chr8	142675495	142687725
PSCA_chr8_142675495_142687725	0/0	t0003	638	8	8	0	0	0	0	copy fasta	PSCA	chr8	142675495	142687725
PSCA_chr8_142675495_142687725	0/0	t0004	638	1	1	0	0	0	0	copy fasta	PSCA	chr8	142675495	142687725
PSCA_chr8_142675495_142687725	0/0	t0005	638	1	1	0	0	0	0	copy fasta	PSCA	chr8	142675495	142687725
PSCA_chr8_142675495_142687725	0/0	t0006	638	1	1	0	0	0	0	copy fasta	PSCA	chr8	142675495	142687725
PSCA_chr8_142675495_142687725	0/0	t0007	638	1	0	0	1	0	0	copy fasta	PSCA	chr8	142675495	142687725
PSD2_chr5_139790808_139849466	1/1	t0001	2211	147	29	29	61	8	18	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	t0002	2211	41	9	6	18	2	6	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	t0003	2211	23	10	1	8	0	4	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	t0004	2211	19	10	0	6	0	3	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	t0005	2211	8	7	1	0	0	0	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	t0006	2211	7	7	0	0	0	0	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	t0007	2211	5	0	0	5	0	0	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	t0008	2211	5	5	0	0	0	0	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	t0009	2211	3	2	1	0	0	0	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	t0010	2211	3	0	1	0	1	1	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	t0011	2211	2	0	1	0	1	0	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	t0012	2211	1	0	1	0	0	0	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	t0013	2211	1	1	0	0	0	0	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	t0014	2211	1	1	0	0	0	0	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	t0015	2211	1	1	0	0	0	0	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	t0016	2211	1	1	0	0	0	0	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	t0017	2198	1	0	1	0	0	0	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	t0018	2211	1	1	0	0	0	0	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	t0019	2211	1	0	1	0	0	0	copy fasta	PSD2	chr5	139790808	139849466