JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PSD2_chr5_139790808_139849466	0/0	t0020	2211	1	0	1	0	0	0	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	t0021	2211	1	0	0	0	0	1	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	t0022	2211	1	0	0	0	0	1	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	t0023	2211	1	0	0	1	0	0	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	t0024	2211	1	0	0	1	0	0	copy fasta	PSD2	chr5	139790808	139849466
PSD3_chr8_18522303_19018703	0/0	t0001	8566	62	5	15	30	3	9	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0002	8561	11	11	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0003	8561	9	8	1	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0004	8566	6	0	0	3	1	2	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0005	8566	5	1	4	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0006	8561	5	5	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0007	8561	5	0	0	3	1	1	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/1	t0008	8566	4	0	0	0	0	3	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0009	8567	4	0	1	0	0	3	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0010	8566	4	4	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0011	8566	4	0	3	0	0	1	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0012	8561	4	4	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	1/0	t0013	8561	4	1	1	1	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0014	8561	4	1	1	2	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0015	8561	4	4	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0016	8561	4	0	0	4	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0017	8560	4	4	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0018	8567	3	0	0	3	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0019	8566	3	3	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0020	8565	3	2	1	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0021	8562	3	3	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0022	8563	2	2	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0023	8566	2	2	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0024	8566	2	0	0	2	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0025	8561	2	2	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0026	8561	2	2	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0027	8561	2	2	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0028	8561	2	2	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0029	8561	2	0	0	2	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0030	8560	2	1	1	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0031	8566	1	0	0	1	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0032	8566	1	0	0	1	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0033	8563	1	1	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0034	8566	1	0	1	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0035	8566	1	0	1	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0036	8563	1	1	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0037	8563	1	0	0	1	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0038	8566	1	1	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0039	8566	1	0	1	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0040	8566	1	0	0	0	0	1	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0041	8566	1	0	0	0	1	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0042	8566	1	1	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0043	8566	1	1	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0044	8566	1	0	0	0	0	1	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0045	8566	1	0	1	0	0	0	copy fasta	PSD3	chr8	18522303	19018703