JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PSD3_chr8_18522303_19018703	0/0	t0046	8566	1	0	0	1	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0047	8566	1	0	0	1	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0048	8566	1	0	0	0	0	1	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0049	8566	1	0	0	0	0	1	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0050	8566	1	1	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0051	8566	1	0	1	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0052	8566	1	1	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0053	8555	1	0	1	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0054	8566	1	0	0	1	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0055	8562	1	1	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0056	8562	1	0	1	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0057	8562	1	0	0	1	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0058	8565	1	1	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0059	8561	1	1	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0060	8561	1	1	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0061	8561	1	0	0	1	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0062	8561	1	1	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0063	8561	1	0	1	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0064	8561	1	0	0	1	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0065	8561	1	0	0	1	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0066	8561	1	0	0	1	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0067	8561	1	0	0	1	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0068	8561	1	1	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0069	8561	1	0	0	0	0	1	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0070	8561	1	0	0	1	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0071	8561	1	0	0	1	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0072	8561	1	1	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0073	8561	1	1	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0074	8561	1	0	0	0	0	1	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0075	8561	1	0	0	1	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0076	8561	1	0	0	0	0	1	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0077	8560	1	0	0	0	0	1	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0078	8566	1	0	1	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0079	8566	1	0	0	0	0	1	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0080	8566	1	0	0	0	0	1	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0081	8566	1	0	0	1	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0082	8566	1	0	1	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0083	8561	1	0	0	0	0	1	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0084	8566	1	0	0	0	0	1	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	t0085	8563	1	0	0	0	0	1	copy fasta	PSD3	chr8	18522303	19018703
PSD4_chr2_113168971_113214391	0/0	t0001	8171	59	4	15	37	2	1	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0002	8171	35	5	8	10	2	10	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0003	8171	17	1	7	5	0	4	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0004	8176	16	0	2	11	0	3	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0005	8176	14	11	2	0	1	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0006	8171	12	0	0	11	0	1	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0007	8177	12	6	1	3	1	1	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0008	8180	9	1	1	6	0	1	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0009	8163	8	4	3	0	1	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0010	8171	8	8	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391