JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PSD4_chr2_113168971_113214391	0/0	t0011	8177	8	0	0	8	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0012	8178	8	0	3	4	0	1	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0013	8179	8	0	0	7	0	1	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0014	8164	6	1	3	0	1	1	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0015	8172	5	5	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0016	8163	5	5	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0017	8172	5	0	0	2	0	3	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0018	8171	5	5	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0019	8171	4	0	1	1	0	2	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0020	8171	4	0	0	4	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0021	8170	4	1	0	3	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0022	8169	4	0	3	1	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0023	8172	4	0	0	2	1	1	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0024	8174	4	4	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0025	8175	4	2	0	2	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0026	8180	4	0	0	4	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0027	8173	3	3	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0028	8169	3	0	0	1	1	1	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0029	8170	3	0	0	2	0	1	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0030	8170	3	1	2	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0031	8170	3	0	2	1	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0032	8170	3	0	1	0	1	1	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0033	8171	3	3	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0034	8172	3	0	1	2	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0035	8175	3	0	0	3	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0036	8176	2	1	1	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0037	8177	2	2	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0038	8158	2	2	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0039	8162	2	2	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0040	8165	2	0	2	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0041	8172	2	0	1	0	0	1	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0042	8171	2	0	0	0	2	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0043	8172	2	2	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0044	8177	2	2	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0045	8175	2	2	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0046	8176	2	2	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0047	8177	2	0	0	2	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0048	8172	1	1	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0049	8171	1	1	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0050	8173	1	0	0	0	0	1	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0051	8171	1	1	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0052	8175	1	1	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	1/0	t0053	8172	1	0	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0054	8170	1	0	0	0	0	1	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0055	8171	1	0	0	0	1	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0056	8172	1	0	0	0	0	1	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0057	8176	1	0	1	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0058	8163	1	0	0	0	0	1	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0059	8164	1	1	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0060	8169	1	0	0	1	0	0	copy fasta	PSD4	chr2	113168971	113214391