JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PSD4_chr2_113168971_113214391	0/0	t0061	8170	1	0	0	1	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0062	8169	1	0	0	0	0	1	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0063	8167	1	0	1	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0064	8170	1	0	0	0	0	1	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0065	8170	1	0	0	0	0	1	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0066	8169	1	0	1	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0067	8170	1	0	0	1	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0068	8171	1	0	1	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0069	8171	1	0	0	0	0	1	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0070	8171	1	0	0	0	0	1	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0071	8171	1	0	0	1	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0072	8171	1	0	0	1	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0073	8168	1	0	0	0	0	1	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0074	8171	1	0	1	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0075	8171	1	0	1	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0076	8173	1	0	0	1	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/1	t0077	8171	1	0	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0078	8171	1	1	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0079	8172	1	0	0	1	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0080	8172	1	0	0	1	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0081	8173	1	1	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0082	8174	1	1	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0083	8175	1	0	0	0	1	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0084	8176	1	0	0	0	0	1	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0085	8177	1	0	0	1	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0086	8176	1	0	0	0	0	1	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0087	8176	1	0	0	1	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0088	8176	1	0	1	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0089	8177	1	0	0	1	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0090	8176	1	0	0	1	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0091	8176	1	0	0	1	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0092	8176	1	1	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0093	8177	1	0	0	1	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0094	8178	1	0	0	0	0	1	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0095	8178	1	0	0	1	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0096	8171	1	0	0	0	1	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0097	8171	1	0	0	1	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0098	8172	1	1	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0099	8171	1	0	0	1	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0100	8178	1	0	0	1	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0101	8171	1	0	0	0	0	1	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0102	8175	1	0	0	1	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0103	8156	1	0	0	1	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	t0104	8176	1	1	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD_chr10_102397619_102423785	1/0	t0001	750	273	79	50	111	8	24	copy fasta	PSD	chr10	102397619	102423785
PSD_chr10_102397619_102423785	0/1	t0002	750	94	9	20	44	4	16	copy fasta	PSD	chr10	102397619	102423785
PSD_chr10_102397619_102423785	0/0	t0003	750	4	0	0	4	0	0	copy fasta	PSD	chr10	102397619	102423785
PSD_chr10_102397619_102423785	0/0	t0004	751	4	1	0	3	0	0	copy fasta	PSD	chr10	102397619	102423785
PSD_chr10_102397619_102423785	0/0	t0005	751	3	1	0	2	0	0	copy fasta	PSD	chr10	102397619	102423785
PSD_chr10_102397619_102423785	0/0	t0006	751	2	0	0	2	0	0	copy fasta	PSD	chr10	102397619	102423785