JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PSD_chr10_102397619_102423785	0/0	t0007	751	2	0	0	2	0	0	copy fasta	PSD	chr10	102397619	102423785
PSD_chr10_102397619_102423785	0/0	t0008	750	1	1	0	0	0	0	copy fasta	PSD	chr10	102397619	102423785
PSD_chr10_102397619_102423785	0/0	t0009	750	1	0	1	0	0	0	copy fasta	PSD	chr10	102397619	102423785
PSD_chr10_102397619_102423785	0/0	t0010	750	1	1	0	0	0	0	copy fasta	PSD	chr10	102397619	102423785
PSD_chr10_102397619_102423785	0/0	t0011	750	1	0	0	1	0	0	copy fasta	PSD	chr10	102397619	102423785
PSD_chr10_102397619_102423785	0/0	t0012	750	1	0	0	1	0	0	copy fasta	PSD	chr10	102397619	102423785
PSD_chr10_102397619_102423785	0/0	t0013	750	1	0	1	0	0	0	copy fasta	PSD	chr10	102397619	102423785
PSEN1_chr14_73131507_73228691	0/0	t0001	4615	117	30	23	55	2	7	copy fasta	PSEN1	chr14	73131507	73228691
PSEN1_chr14_73131507_73228691	1/0	t0002	4615	66	12	21	23	4	5	copy fasta	PSEN1	chr14	73131507	73228691
PSEN1_chr14_73131507_73228691	0/0	t0003	4615	47	8	3	31	1	4	copy fasta	PSEN1	chr14	73131507	73228691
PSEN1_chr14_73131507_73228691	0/0	t0004	4615	36	9	12	6	1	8	copy fasta	PSEN1	chr14	73131507	73228691
PSEN1_chr14_73131507_73228691	0/0	t0005	4615	34	1	6	27	0	0	copy fasta	PSEN1	chr14	73131507	73228691
PSEN1_chr14_73131507_73228691	0/0	t0006	4615	17	1	1	12	0	3	copy fasta	PSEN1	chr14	73131507	73228691
PSEN1_chr14_73131507_73228691	0/0	t0007	4615	10	9	1	0	0	0	copy fasta	PSEN1	chr14	73131507	73228691
PSEN1_chr14_73131507_73228691	0/0	t0008	4615	6	0	1	1	2	2	copy fasta	PSEN1	chr14	73131507	73228691
PSEN1_chr14_73131507_73228691	0/1	t0009	4615	6	0	3	0	0	2	copy fasta	PSEN1	chr14	73131507	73228691
PSEN1_chr14_73131507_73228691	0/0	t0010	4615	5	0	0	5	0	0	copy fasta	PSEN1	chr14	73131507	73228691
PSEN1_chr14_73131507_73228691	0/0	t0011	4615	4	4	0	0	0	0	copy fasta	PSEN1	chr14	73131507	73228691
PSEN1_chr14_73131507_73228691	0/0	t0012	4603	4	0	0	4	0	0	copy fasta	PSEN1	chr14	73131507	73228691
PSEN1_chr14_73131507_73228691	0/0	t0013	4615	3	0	0	0	0	3	copy fasta	PSEN1	chr14	73131507	73228691
PSEN1_chr14_73131507_73228691	0/0	t0014	4615	2	0	0	2	0	0	copy fasta	PSEN1	chr14	73131507	73228691
PSEN1_chr14_73131507_73228691	0/0	t0015	4615	2	1	1	0	0	0	copy fasta	PSEN1	chr14	73131507	73228691
PSEN1_chr14_73131507_73228691	0/0	t0016	4615	2	2	0	0	0	0	copy fasta	PSEN1	chr14	73131507	73228691
PSEN1_chr14_73131507_73228691	0/0	t0017	4615	2	2	0	0	0	0	copy fasta	PSEN1	chr14	73131507	73228691
PSEN1_chr14_73131507_73228691	0/0	t0018	4615	2	0	0	0	0	2	copy fasta	PSEN1	chr14	73131507	73228691
PSEN1_chr14_73131507_73228691	0/0	t0019	4615	1	1	0	0	0	0	copy fasta	PSEN1	chr14	73131507	73228691
PSEN1_chr14_73131507_73228691	0/0	t0020	4615	1	1	0	0	0	0	copy fasta	PSEN1	chr14	73131507	73228691
PSEN1_chr14_73131507_73228691	0/0	t0021	4572	1	0	1	0	0	0	copy fasta	PSEN1	chr14	73131507	73228691
PSEN1_chr14_73131507_73228691	0/0	t0022	4615	1	1	0	0	0	0	copy fasta	PSEN1	chr14	73131507	73228691
PSEN1_chr14_73131507_73228691	0/0	t0023	4615	1	0	0	1	0	0	copy fasta	PSEN1	chr14	73131507	73228691
PSEN1_chr14_73131507_73228691	0/0	t0024	4615	1	1	0	0	0	0	copy fasta	PSEN1	chr14	73131507	73228691
PSEN1_chr14_73131507_73228691	0/0	t0025	4615	1	1	0	0	0	0	copy fasta	PSEN1	chr14	73131507	73228691
PSEN1_chr14_73131507_73228691	0/0	t0026	4615	1	1	0	0	0	0	copy fasta	PSEN1	chr14	73131507	73228691
PSEN1_chr14_73131507_73228691	0/0	t0027	4615	1	0	1	0	0	0	copy fasta	PSEN1	chr14	73131507	73228691
PSEN1_chr14_73131507_73228691	0/0	t0028	4615	1	1	0	0	0	0	copy fasta	PSEN1	chr14	73131507	73228691
PSEN1_chr14_73131507_73228691	0/0	t0029	4615	1	1	0	0	0	0	copy fasta	PSEN1	chr14	73131507	73228691
PSEN1_chr14_73131507_73228691	0/0	t0030	4615	1	1	0	0	0	0	copy fasta	PSEN1	chr14	73131507	73228691
PSEN1_chr14_73131507_73228691	0/0	t0031	4615	1	0	0	1	0	0	copy fasta	PSEN1	chr14	73131507	73228691
PSEN2_chr1_226865616_226901098	0/1	t0001	903	180	30	35	87	10	17	copy fasta	PSEN2	chr1	226865616	226901098
PSEN2_chr1_226865616_226901098	0/0	t0002	903	106	26	12	54	2	12	copy fasta	PSEN2	chr1	226865616	226901098
PSEN2_chr1_226865616_226901098	0/0	t0003	903	62	0	16	35	5	6	copy fasta	PSEN2	chr1	226865616	226901098
PSEN2_chr1_226865616_226901098	0/0	t0004	903	40	18	5	14	0	3	copy fasta	PSEN2	chr1	226865616	226901098
PSEN2_chr1_226865616_226901098	0/0	t0005	903	7	5	2	0	0	0	copy fasta	PSEN2	chr1	226865616	226901098
PSEN2_chr1_226865616_226901098	0/0	t0006	903	5	5	0	0	0	0	copy fasta	PSEN2	chr1	226865616	226901098
PSEN2_chr1_226865616_226901098	1/0	t0007	903	3	1	0	1	0	0	copy fasta	PSEN2	chr1	226865616	226901098
PSEN2_chr1_226865616_226901098	0/0	t0008	903	3	0	0	0	0	3	copy fasta	PSEN2	chr1	226865616	226901098
PSEN2_chr1_226865616_226901098	0/0	t0009	903	2	2	0	0	0	0	copy fasta	PSEN2	chr1	226865616	226901098
PSEN2_chr1_226865616_226901098	0/0	t0010	903	1	0	0	0	1	0	copy fasta	PSEN2	chr1	226865616	226901098
PSEN2_chr1_226865616_226901098	0/0	t0011	903	1	0	0	1	0	0	copy fasta	PSEN2	chr1	226865616	226901098
PSEN2_chr1_226865616_226901098	0/0	t0012	903	1	0	0	1	0	0	copy fasta	PSEN2	chr1	226865616	226901098