JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PSEN2_chr1_226865616_226901098	0/0	t0013	903	1	1	0	0	0	0	copy fasta	PSEN2	chr1	226865616	226901098
PSEN2_chr1_226865616_226901098	0/0	t0014	903	1	1	0	0	0	0	copy fasta	PSEN2	chr1	226865616	226901098
PSEN2_chr1_226865616_226901098	0/0	t0015	903	1	0	0	1	0	0	copy fasta	PSEN2	chr1	226865616	226901098
PSEN2_chr1_226865616_226901098	0/0	t0016	903	1	0	0	0	0	1	copy fasta	PSEN2	chr1	226865616	226901098
PSEN2_chr1_226865616_226901098	0/0	t0017	903	1	1	0	0	0	0	copy fasta	PSEN2	chr1	226865616	226901098
PSENEN_chr19_35740651_35752519	1/0	t0001	819	235	45	43	111	9	26	copy fasta	PSENEN	chr19	35740651	35752519
PSENEN_chr19_35740651_35752519	0/1	t0002	818	91	36	22	24	1	7	copy fasta	PSENEN	chr19	35740651	35752519
PSENEN_chr19_35740651_35752519	0/0	t0003	820	51	7	6	27	4	7	copy fasta	PSENEN	chr19	35740651	35752519
PSENEN_chr19_35740651_35752519	0/0	t0004	820	23	0	0	23	0	0	copy fasta	PSENEN	chr19	35740651	35752519
PSENEN_chr19_35740651_35752519	0/0	t0005	821	5	4	1	0	0	0	copy fasta	PSENEN	chr19	35740651	35752519
PSENEN_chr19_35740651_35752519	0/0	t0006	821	4	0	0	4	0	0	copy fasta	PSENEN	chr19	35740651	35752519
PSENEN_chr19_35740651_35752519	0/0	t0007	818	1	1	0	0	0	0	copy fasta	PSENEN	chr19	35740651	35752519
PSENEN_chr19_35740651_35752519	0/0	t0008	819	1	0	0	1	0	0	copy fasta	PSENEN	chr19	35740651	35752519
PSENEN_chr19_35740651_35752519	0/0	t0009	818	1	1	0	0	0	0	copy fasta	PSENEN	chr19	35740651	35752519
PSG11_chr19_43002656_43031469	0/0	t0001	525	200	32	29	109	10	20	copy fasta	PSG11	chr19	43002656	43031469
PSG11_chr19_43002656_43031469	1/1	t0002	525	82	16	33	2	7	22	copy fasta	PSG11	chr19	43002656	43031469
PSG11_chr19_43002656_43031469	0/0	t0003	525	78	4	11	58	1	4	copy fasta	PSG11	chr19	43002656	43031469
PSG11_chr19_43002656_43031469	0/0	t0004	529	17	16	1	0	0	0	copy fasta	PSG11	chr19	43002656	43031469
PSG11_chr19_43002656_43031469	0/0	t0005	525	11	11	0	0	0	0	copy fasta	PSG11	chr19	43002656	43031469
PSG11_chr19_43002656_43031469	0/0	t0006	525	6	6	0	0	0	0	copy fasta	PSG11	chr19	43002656	43031469
PSG11_chr19_43002656_43031469	0/0	t0007	524	4	4	0	0	0	0	copy fasta	PSG11	chr19	43002656	43031469
PSG11_chr19_43002656_43031469	0/0	t0008	529	1	1	0	0	0	0	copy fasta	PSG11	chr19	43002656	43031469
PSG11_chr19_43002656_43031469	0/0	t0009	525	1	0	0	1	0	0	copy fasta	PSG11	chr19	43002656	43031469
PSG1_chr19_42861464_42884713	1/1	t0001	803	216	44	46	96	9	19	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	t0002	803	125	16	13	75	3	18	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	t0003	803	28	4	13	2	2	7	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	t0004	803	16	14	1	1	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	t0005	803	5	5	0	0	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	t0006	803	4	0	0	4	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	t0007	803	3	3	0	0	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	t0008	803	2	2	0	0	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	t0009	803	2	1	0	1	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	t0010	803	1	0	0	1	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	t0011	803	1	0	1	0	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	t0012	803	1	1	0	0	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	t0013	803	1	1	0	0	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	t0014	803	1	0	1	0	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	t0015	803	1	1	0	0	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	t0016	803	1	0	1	0	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG2_chr19_43059209_43087701	0/1	t0001	566	371	82	59	187	12	30	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	1/0	t0002	566	40	5	22	1	1	10	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	t0003	566	5	0	2	0	1	2	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	t0004	566	3	0	0	3	0	0	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	t0005	566	2	2	0	0	0	0	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	t0006	566	1	1	0	0	0	0	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	t0007	566	1	0	1	0	0	0	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	t0008	566	1	0	0	1	0	0	copy fasta	PSG2	chr19	43059209	43087701
PSG3_chr19_42716642_42745481	1/1	t0001	587	308	67	60	121	14	44	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	0/0	t0002	587	24	1	13	5	2	3	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	0/0	t0003	587	13	13	0	0	0	0	copy fasta	PSG3	chr19	42716642	42745481