JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PSG3_chr19_42716642_42745481	0/0	t0004	587	6	4	2	0	0	0	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	0/0	t0005	587	5	5	0	0	0	0	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	0/0	t0006	587	3	0	3	0	0	0	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	0/0	t0007	587	2	2	0	0	0	0	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	0/0	t0008	587	2	0	1	0	0	1	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	0/0	t0009	587	2	2	0	0	0	0	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	0/0	t0010	587	1	1	0	0	0	0	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	0/0	t0011	490	1	1	0	0	0	0	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	0/0	t0012	490	1	0	1	0	0	0	copy fasta	PSG3	chr19	42716642	42745481
PSG4_chr19_43187702_43210638	0/0	t0001	773	131	10	20	72	5	24	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	1/0	t0002	773	65	13	31	6	2	12	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	t0003	773	36	11	4	20	0	1	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	t0004	773	28	15	5	1	3	4	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	t0005	773	15	13	0	0	1	1	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	t0006	774	4	0	2	0	1	1	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	t0007	773	3	2	1	0	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/1	t0008	773	3	0	1	0	0	1	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	t0009	671	3	1	1	1	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	t0010	772	2	0	0	2	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	t0011	773	2	0	2	0	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	t0012	773	2	0	0	2	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	t0013	773	1	1	0	0	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	t0014	772	1	0	1	0	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	t0015	773	1	1	0	0	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	t0016	773	1	1	0	0	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	t0017	773	1	1	0	0	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	t0018	773	1	1	0	0	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG5_chr19_43162743_43191536	0/0	t0001	633	180	14	20	119	6	21	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/1	t0002	633	127	24	13	79	3	7	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	1/0	t0003	633	102	40	40	3	4	14	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	t0004	633	11	9	0	1	0	1	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	t0005	633	3	0	0	0	1	2	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	t0006	633	2	0	0	2	0	0	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	t0007	633	2	0	1	0	0	1	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	t0008	633	1	1	0	0	0	0	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	t0009	633	1	0	0	1	0	0	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	t0010	633	1	0	0	1	0	0	copy fasta	PSG5	chr19	43162743	43191536
PSG6_chr19_42897086_42922894	1/1	t0001	429	392	82	72	178	15	43	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	t0002	429	7	5	1	1	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	t0003	428	5	4	1	0	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	t0004	429	4	1	0	0	1	2	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	t0005	429	3	0	0	3	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	t0006	429	1	0	0	0	0	1	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	t0007	429	1	0	0	1	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	t0008	429	1	0	0	1	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG7_chr19_42919132_42942207	0/0	t0000	0	1	1	0	0	0	0	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	1/1	t0001	808	219	32	50	109	8	18	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	t0002	808	127	25	13	68	3	18	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	t0003	808	29	6	12	2	3	6	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	t0004	808	14	10	1	2	0	1	copy fasta	PSG7	chr19	42919132	42942207