JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PSG7_chr19_42919132_42942207	0/0	t0005	808	7	7	0	0	0	0	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	t0006	808	7	6	1	0	0	0	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	t0007	808	2	2	0	0	0	0	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	t0008	808	1	0	0	1	0	0	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	t0009	808	1	0	0	1	0	0	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	t0010	808	1	0	0	0	0	1	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	t0011	808	1	0	0	1	0	0	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	t0012	808	1	0	1	0	0	0	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	t0013	808	1	0	0	1	0	0	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	t0014	808	1	0	0	1	0	0	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	t0015	808	1	0	0	0	0	1	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	t0016	808	1	1	0	0	0	0	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	t0017	677	1	0	0	0	0	1	copy fasta	PSG7	chr19	42919132	42942207
PSG8_chr19_42749233_42770678	1/1	t0001	160	434	94	80	198	16	44	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	t0002	160	2	0	0	2	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	t0003	160	2	2	0	0	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG9_chr19_43248282_43274530	0/1	t0001	427	136	23	21	59	2	30	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	1/0	t0002	427	62	13	30	3	7	8	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	t0003	427	4	4	0	0	0	0	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	t0004	427	3	0	0	0	1	2	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	t0005	427	1	0	1	0	0	0	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	t0006	427	1	1	0	0	0	0	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	t0007	427	1	1	0	0	0	0	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	t0008	427	1	1	0	0	0	0	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	t0009	427	1	1	0	0	0	0	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	t0010	427	1	1	0	0	0	0	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	t0011	427	1	1	0	0	0	0	copy fasta	PSG9	chr19	43248282	43274530
PSIP1_chr9_15459066_15515970	0/1	t0001	1750	145	28	29	60	8	19	copy fasta	PSIP1	chr9	15459066	15515970
PSIP1_chr9_15459066_15515970	1/0	t0002	1750	41	0	1	27	2	10	copy fasta	PSIP1	chr9	15459066	15515970
PSIP1_chr9_15459066_15515970	0/0	t0003	1750	31	3	0	23	0	5	copy fasta	PSIP1	chr9	15459066	15515970
PSIP1_chr9_15459066_15515970	0/0	t0004	1750	23	16	5	1	0	1	copy fasta	PSIP1	chr9	15459066	15515970
PSIP1_chr9_15459066_15515970	0/0	t0005	1756	13	13	0	0	0	0	copy fasta	PSIP1	chr9	15459066	15515970
PSIP1_chr9_15459066_15515970	0/0	t0006	1750	10	9	1	0	0	0	copy fasta	PSIP1	chr9	15459066	15515970
PSIP1_chr9_15459066_15515970	0/0	t0007	1750	7	3	3	0	0	1	copy fasta	PSIP1	chr9	15459066	15515970
PSIP1_chr9_15459066_15515970	0/0	t0008	1751	6	6	0	0	0	0	copy fasta	PSIP1	chr9	15459066	15515970
PSIP1_chr9_15459066_15515970	0/0	t0009	1750	4	4	0	0	0	0	copy fasta	PSIP1	chr9	15459066	15515970
PSIP1_chr9_15459066_15515970	0/0	t0010	1750	4	0	0	4	0	0	copy fasta	PSIP1	chr9	15459066	15515970
PSIP1_chr9_15459066_15515970	0/0	t0011	1750	2	0	1	0	0	1	copy fasta	PSIP1	chr9	15459066	15515970
PSIP1_chr9_15459066_15515970	0/0	t0012	1766	1	0	1	0	0	0	copy fasta	PSIP1	chr9	15459066	15515970
PSIP1_chr9_15459066_15515970	0/0	t0013	1750	1	0	1	0	0	0	copy fasta	PSIP1	chr9	15459066	15515970
PSIP1_chr9_15459066_15515970	0/0	t0014	1751	1	0	1	0	0	0	copy fasta	PSIP1	chr9	15459066	15515970
PSIP1_chr9_15459066_15515970	0/0	t0015	1750	1	0	0	1	0	0	copy fasta	PSIP1	chr9	15459066	15515970
PSIP1_chr9_15459066_15515970	0/0	t0016	1756	1	1	0	0	0	0	copy fasta	PSIP1	chr9	15459066	15515970
PSIP1_chr9_15459066_15515970	0/0	t0017	1750	1	0	0	1	0	0	copy fasta	PSIP1	chr9	15459066	15515970
PSIP1_chr9_15459066_15515970	0/0	t0018	1750	1	0	0	1	0	0	copy fasta	PSIP1	chr9	15459066	15515970
PSIP1_chr9_15459066_15515970	0/0	t0019	1750	1	0	0	1	0	0	copy fasta	PSIP1	chr9	15459066	15515970
PSIP1_chr9_15459066_15515970	0/0	t0020	1750	1	1	0	0	0	0	copy fasta	PSIP1	chr9	15459066	15515970
PSIP1_chr9_15459066_15515970	0/0	t0021	1750	1	0	0	1	0	0	copy fasta	PSIP1	chr9	15459066	15515970
PSIP1_chr9_15459066_15515970	0/0	t0022	1750	1	1	0	0	0	0	copy fasta	PSIP1	chr9	15459066	15515970
PSIP1_chr9_15459066_15515970	0/0	t0023	1750	1	1	0	0	0	0	copy fasta	PSIP1	chr9	15459066	15515970