Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATP8A1_chr4_42403373_42662105	1/0	t0004	4776	26	19	3	2	0	1	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	t0005	4776	26	4	4	10	1	7	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	t0006	4776	24	0	2	19	1	2	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	t0007	4776	23	2	7	7	3	4	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	t0008	4776	15	4	7	1	0	3	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	t0009	4776	13	3	4	2	1	3	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	t0010	4776	11	5	1	3	0	2	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	t0011	4776	5	2	1	0	1	1	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	t0012	4776	5	5	0	0	0	0	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	t0013	4776	3	1	2	0	0	0	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	t0014	4776	3	0	3	0	0	0	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	t0015	4776	2	2	0	0	0	0	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	t0016	4776	2	2	0	0	0	0	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	t0017	4776	2	0	2	0	0	0	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	t0018	4776	2	2	0	0	0	0	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	t0019	4775	2	2	0	0	0	0	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	t0020	4776	2	2	0	0	0	0	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	t0021	4778	2	2	0	0	0	0	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	t0022	4776	1	1	0	0	0	0	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	t0023	4776	1	1	0	0	0	0	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	t0024	4776	1	1	0	0	0	0	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	t0025	4776	1	0	0	0	0	1	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	t0026	4776	1	1	0	0	0	0	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	t0027	4776	1	1	0	0	0	0	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	t0028	4776	1	0	1	0	0	0	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	t0029	4778	1	1	0	0	0	0	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	t0030	4776	1	0	1	0	0	0	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	t0031	4776	1	1	0	0	0	0	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	t0032	4776	1	1	0	0	0	0	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	t0033	4776	1	0	0	0	0	1	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	t0034	4775	1	1	0	0	0	0	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	t0035	4776	1	0	0	1	0	0	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	t0036	4776	1	0	1	0	0	0	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	t0037	4776	1	0	0	0	0	1	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A1_chr4_42403373_42662105	0/0	t0038	4788	1	0	0	0	0	1	copy fasta	ATP8A1	chr4	42403373	42662105
ATP8A2_chr13_25366974_26030851	0/0	t0001	6104	10	4	2	3	0	1	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0002	6106	6	0	4	2	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0003	6104	4	3	1	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0004	6104	4	0	4	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0005	6104	4	3	1	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0006	6105	3	3	0	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0007	6105	3	1	1	1	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0008	6109	3	3	0	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0009	6108	3	1	0	1	0	1	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0010	6106	3	3	0	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0011	6106	3	0	3	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0012	6107	2	2	0	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0013	6106	2	2	0	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0014	6105	2	0	0	2	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0015	6106	2	0	1	0	0	1	copy fasta	ATP8A2	chr13	25366974	26030851