JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PSIP1_chr9_15459066_15515970	0/0	t0024	1750	1	0	0	0	0	1	copy fasta	PSIP1	chr9	15459066	15515970
PSIP1_chr9_15459066_15515970	0/0	t0025	1750	1	0	1	0	0	0	copy fasta	PSIP1	chr9	15459066	15515970
PSKH1_chr16_67888254_67934676	1/1	t0001	2223	122	22	33	38	9	18	copy fasta	PSKH1	chr16	67888254	67934676
PSKH1_chr16_67888254_67934676	0/0	t0002	2226	51	21	12	9	1	8	copy fasta	PSKH1	chr16	67888254	67934676
PSKH1_chr16_67888254_67934676	0/0	t0003	2223	9	7	1	0	0	1	copy fasta	PSKH1	chr16	67888254	67934676
PSKH1_chr16_67888254_67934676	0/0	t0004	2223	7	0	0	7	0	0	copy fasta	PSKH1	chr16	67888254	67934676
PSKH1_chr16_67888254_67934676	0/0	t0005	2223	5	5	0	0	0	0	copy fasta	PSKH1	chr16	67888254	67934676
PSKH1_chr16_67888254_67934676	0/0	t0006	2211	4	4	0	0	0	0	copy fasta	PSKH1	chr16	67888254	67934676
PSKH1_chr16_67888254_67934676	0/0	t0007	2220	4	4	0	0	0	0	copy fasta	PSKH1	chr16	67888254	67934676
PSKH1_chr16_67888254_67934676	0/0	t0008	2223	3	3	0	0	0	0	copy fasta	PSKH1	chr16	67888254	67934676
PSKH1_chr16_67888254_67934676	0/0	t0009	2211	2	2	0	0	0	0	copy fasta	PSKH1	chr16	67888254	67934676
PSKH1_chr16_67888254_67934676	0/0	t0010	2223	2	2	0	0	0	0	copy fasta	PSKH1	chr16	67888254	67934676
PSKH1_chr16_67888254_67934676	0/0	t0011	2223	2	1	1	0	0	0	copy fasta	PSKH1	chr16	67888254	67934676
PSKH1_chr16_67888254_67934676	0/0	t0012	2229	2	0	2	0	0	0	copy fasta	PSKH1	chr16	67888254	67934676
PSKH1_chr16_67888254_67934676	0/0	t0013	2211	1	1	0	0	0	0	copy fasta	PSKH1	chr16	67888254	67934676
PSKH1_chr16_67888254_67934676	0/0	t0014	2220	1	1	0	0	0	0	copy fasta	PSKH1	chr16	67888254	67934676
PSKH1_chr16_67888254_67934676	0/0	t0015	2220	1	1	0	0	0	0	copy fasta	PSKH1	chr16	67888254	67934676
PSKH1_chr16_67888254_67934676	0/0	t0016	2223	1	0	0	0	0	1	copy fasta	PSKH1	chr16	67888254	67934676
PSKH1_chr16_67888254_67934676	0/0	t0017	2223	1	0	1	0	0	0	copy fasta	PSKH1	chr16	67888254	67934676
PSKH1_chr16_67888254_67934676	0/0	t0018	2223	1	0	1	0	0	0	copy fasta	PSKH1	chr16	67888254	67934676
PSKH1_chr16_67888254_67934676	0/0	t0019	2223	1	1	0	0	0	0	copy fasta	PSKH1	chr16	67888254	67934676
PSKH1_chr16_67888254_67934676	0/0	t0020	2223	1	1	0	0	0	0	copy fasta	PSKH1	chr16	67888254	67934676
PSKH1_chr16_67888254_67934676	0/0	t0021	2223	1	1	0	0	0	0	copy fasta	PSKH1	chr16	67888254	67934676
PSKH1_chr16_67888254_67934676	0/0	t0022	2223	1	1	0	0	0	0	copy fasta	PSKH1	chr16	67888254	67934676
PSKH1_chr16_67888254_67934676	0/0	t0023	2223	1	1	0	0	0	0	copy fasta	PSKH1	chr16	67888254	67934676
PSKH1_chr16_67888254_67934676	0/0	t0024	2223	1	0	1	0	0	0	copy fasta	PSKH1	chr16	67888254	67934676
PSKH1_chr16_67888254_67934676	0/0	t0025	2223	1	1	0	0	0	0	copy fasta	PSKH1	chr16	67888254	67934676
PSKH1_chr16_67888254_67934676	0/0	t0026	2226	1	1	0	0	0	0	copy fasta	PSKH1	chr16	67888254	67934676
PSKH1_chr16_67888254_67934676	0/0	t0027	2226	1	0	0	0	0	1	copy fasta	PSKH1	chr16	67888254	67934676
PSKH1_chr16_67888254_67934676	0/0	t0028	2229	1	0	0	0	0	1	copy fasta	PSKH1	chr16	67888254	67934676
PSKH1_chr16_67888254_67934676	0/0	t0029	2223	1	1	0	0	0	0	copy fasta	PSKH1	chr16	67888254	67934676
PSKH2_chr8_86042109_86074668	1/1	t0001	1400	244	53	60	99	7	23	copy fasta	PSKH2	chr8	86042109	86074668
PSKH2_chr8_86042109_86074668	0/0	t0002	1401	146	21	21	78	8	18	copy fasta	PSKH2	chr8	86042109	86074668
PSKH2_chr8_86042109_86074668	0/0	t0003	1401	9	9	0	0	0	0	copy fasta	PSKH2	chr8	86042109	86074668
PSKH2_chr8_86042109_86074668	0/0	t0004	1401	6	6	0	0	0	0	copy fasta	PSKH2	chr8	86042109	86074668
PSKH2_chr8_86042109_86074668	0/0	t0005	1401	3	3	0	0	0	0	copy fasta	PSKH2	chr8	86042109	86074668
PSKH2_chr8_86042109_86074668	0/0	t0006	1400	3	3	0	0	0	0	copy fasta	PSKH2	chr8	86042109	86074668
PSKH2_chr8_86042109_86074668	0/0	t0007	1401	2	1	1	0	0	0	copy fasta	PSKH2	chr8	86042109	86074668
PSKH2_chr8_86042109_86074668	0/0	t0008	1401	2	2	0	0	0	0	copy fasta	PSKH2	chr8	86042109	86074668
PSKH2_chr8_86042109_86074668	0/0	t0009	1400	1	1	0	0	0	0	copy fasta	PSKH2	chr8	86042109	86074668
PSKH2_chr8_86042109_86074668	0/0	t0010	1400	1	1	0	0	0	0	copy fasta	PSKH2	chr8	86042109	86074668
PSKH2_chr8_86042109_86074668	0/0	t0011	1401	1	0	0	1	0	0	copy fasta	PSKH2	chr8	86042109	86074668
PSKH2_chr8_86042109_86074668	0/0	t0012	1400	1	0	0	0	1	0	copy fasta	PSKH2	chr8	86042109	86074668
PSKH2_chr8_86042109_86074668	0/0	t0013	1400	1	0	0	0	0	1	copy fasta	PSKH2	chr8	86042109	86074668
PSMA1_chr11_14499876_14525386	1/1	t0001	404	409	91	70	186	16	44	copy fasta	PSMA1	chr11	14499876	14525386
PSMA1_chr11_14499876_14525386	0/0	t0002	404	3	3	0	0	0	0	copy fasta	PSMA1	chr11	14499876	14525386
PSMA2_chr7_42911861_42937174	1/1	t0001	730	274	74	49	108	10	31	copy fasta	PSMA2	chr7	42911861	42937174
PSMA2_chr7_42911861_42937174	0/0	t0002	730	36	1	8	18	2	7	copy fasta	PSMA2	chr7	42911861	42937174
PSMA2_chr7_42911861_42937174	0/0	t0003	730	16	6	7	1	2	0	copy fasta	PSMA2	chr7	42911861	42937174
PSMA2_chr7_42911861_42937174	0/0	t0004	730	5	5	0	0	0	0	copy fasta	PSMA2	chr7	42911861	42937174