JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PSMA2_chr7_42911861_42937174	0/0	t0005	730	2	2	0	0	0	0	copy fasta	PSMA2	chr7	42911861	42937174
PSMA2_chr7_42911861_42937174	0/0	t0006	730	1	1	0	0	0	0	copy fasta	PSMA2	chr7	42911861	42937174
PSMA2_chr7_42911861_42937174	0/0	t0007	730	1	0	0	1	0	0	copy fasta	PSMA2	chr7	42911861	42937174
PSMA2_chr7_42911861_42937174	0/0	t0008	730	1	1	0	0	0	0	copy fasta	PSMA2	chr7	42911861	42937174
PSMA3_chr14_58239843_58277004	1/1	t0001	188	330	82	56	146	10	34	copy fasta	PSMA3	chr14	58239843	58277004
PSMA3_chr14_58239843_58277004	0/0	t0002	188	1	0	0	1	0	0	copy fasta	PSMA3	chr14	58239843	58277004
PSMA3_chr14_58239843_58277004	0/0	t0003	188	1	0	0	1	0	0	copy fasta	PSMA3	chr14	58239843	58277004
PSMA4_chr15_78535444_78557417	0/0	t0001	3594	97	14	26	40	2	15	copy fasta	PSMA4	chr15	78535444	78557417
PSMA4_chr15_78535444_78557417	0/0	t0002	3593	59	7	19	15	1	17	copy fasta	PSMA4	chr15	78535444	78557417
PSMA4_chr15_78535444_78557417	0/0	t0003	3594	54	4	1	46	0	3	copy fasta	PSMA4	chr15	78535444	78557417
PSMA4_chr15_78535444_78557417	0/0	t0004	3594	53	0	0	53	0	0	copy fasta	PSMA4	chr15	78535444	78557417
PSMA4_chr15_78535444_78557417	0/1	t0005	3594	38	7	12	7	6	5	copy fasta	PSMA4	chr15	78535444	78557417
PSMA4_chr15_78535444_78557417	0/0	t0006	3594	16	13	3	0	0	0	copy fasta	PSMA4	chr15	78535444	78557417
PSMA4_chr15_78535444_78557417	0/0	t0007	3594	15	0	1	12	1	1	copy fasta	PSMA4	chr15	78535444	78557417
PSMA4_chr15_78535444_78557417	0/0	t0008	3594	9	9	0	0	0	0	copy fasta	PSMA4	chr15	78535444	78557417
PSMA4_chr15_78535444_78557417	0/0	t0009	3595	9	0	1	8	0	0	copy fasta	PSMA4	chr15	78535444	78557417
PSMA4_chr15_78535444_78557417	0/0	t0010	3594	7	0	0	7	0	0	copy fasta	PSMA4	chr15	78535444	78557417
PSMA4_chr15_78535444_78557417	0/0	t0011	3595	7	7	0	0	0	0	copy fasta	PSMA4	chr15	78535444	78557417
PSMA4_chr15_78535444_78557417	0/0	t0012	3594	7	0	5	0	0	2	copy fasta	PSMA4	chr15	78535444	78557417
PSMA4_chr15_78535444_78557417	1/0	t0013	3593	7	5	1	0	0	0	copy fasta	PSMA4	chr15	78535444	78557417
PSMA4_chr15_78535444_78557417	0/0	t0014	3594	4	0	2	0	1	1	copy fasta	PSMA4	chr15	78535444	78557417
PSMA4_chr15_78535444_78557417	0/0	t0015	3592	4	4	0	0	0	0	copy fasta	PSMA4	chr15	78535444	78557417
PSMA4_chr15_78535444_78557417	0/0	t0016	3594	4	0	0	4	0	0	copy fasta	PSMA4	chr15	78535444	78557417
PSMA4_chr15_78535444_78557417	0/0	t0017	3594	4	4	0	0	0	0	copy fasta	PSMA4	chr15	78535444	78557417
PSMA4_chr15_78535444_78557417	0/0	t0018	3593	4	0	0	4	0	0	copy fasta	PSMA4	chr15	78535444	78557417
PSMA4_chr15_78535444_78557417	0/0	t0019	3594	3	0	3	0	0	0	copy fasta	PSMA4	chr15	78535444	78557417
PSMA4_chr15_78535444_78557417	0/0	t0020	3595	3	0	0	3	0	0	copy fasta	PSMA4	chr15	78535444	78557417
PSMA4_chr15_78535444_78557417	0/0	t0021	3594	3	3	0	0	0	0	copy fasta	PSMA4	chr15	78535444	78557417
PSMA4_chr15_78535444_78557417	0/0	t0022	3594	2	2	0	0	0	0	copy fasta	PSMA4	chr15	78535444	78557417
PSMA4_chr15_78535444_78557417	0/0	t0023	3594	2	2	0	0	0	0	copy fasta	PSMA4	chr15	78535444	78557417
PSMA4_chr15_78535444_78557417	0/0	t0024	3594	2	1	0	0	1	0	copy fasta	PSMA4	chr15	78535444	78557417
PSMA4_chr15_78535444_78557417	0/0	t0025	3595	2	2	0	0	0	0	copy fasta	PSMA4	chr15	78535444	78557417
PSMA4_chr15_78535444_78557417	0/0	t0026	3594	1	0	0	1	0	0	copy fasta	PSMA4	chr15	78535444	78557417
PSMA4_chr15_78535444_78557417	0/0	t0027	3595	1	1	0	0	0	0	copy fasta	PSMA4	chr15	78535444	78557417
PSMA4_chr15_78535444_78557417	0/0	t0028	3594	1	0	0	1	0	0	copy fasta	PSMA4	chr15	78535444	78557417
PSMA4_chr15_78535444_78557417	0/0	t0029	3594	1	1	0	0	0	0	copy fasta	PSMA4	chr15	78535444	78557417
PSMA4_chr15_78535444_78557417	0/0	t0030	3593	1	0	0	1	0	0	copy fasta	PSMA4	chr15	78535444	78557417
PSMA4_chr15_78535444_78557417	0/0	t0031	3594	1	0	0	0	0	1	copy fasta	PSMA4	chr15	78535444	78557417
PSMA4_chr15_78535444_78557417	0/0	t0032	3595	1	1	0	0	0	0	copy fasta	PSMA4	chr15	78535444	78557417
PSMA4_chr15_78535444_78557417	0/0	t0033	3594	1	0	0	0	1	0	copy fasta	PSMA4	chr15	78535444	78557417
PSMA4_chr15_78535444_78557417	0/0	t0034	3594	1	1	0	0	0	0	copy fasta	PSMA4	chr15	78535444	78557417
PSMA4_chr15_78535444_78557417	0/0	t0035	3594	1	0	0	0	0	1	copy fasta	PSMA4	chr15	78535444	78557417
PSMA4_chr15_78535444_78557417	0/0	t0036	3595	1	0	0	1	0	0	copy fasta	PSMA4	chr15	78535444	78557417
PSMA4_chr15_78535444_78557417	0/0	t0037	3594	1	0	0	1	0	0	copy fasta	PSMA4	chr15	78535444	78557417
PSMA4_chr15_78535444_78557417	0/0	t0038	3594	1	0	0	1	0	0	copy fasta	PSMA4	chr15	78535444	78557417
PSMA4_chr15_78535444_78557417	0/0	t0039	3593	1	0	0	1	0	0	copy fasta	PSMA4	chr15	78535444	78557417
PSMA4_chr15_78535444_78557417	0/0	t0040	3593	1	0	0	0	1	0	copy fasta	PSMA4	chr15	78535444	78557417
PSMA5_chr1_109394042_109431448	0/1	t0001	3090	164	24	38	80	6	15	copy fasta	PSMA5	chr1	109394042	109431448
PSMA5_chr1_109394042_109431448	1/0	t0002	3090	66	32	13	4	7	9	copy fasta	PSMA5	chr1	109394042	109431448
PSMA5_chr1_109394042_109431448	0/0	t0003	3091	20	3	3	7	0	7	copy fasta	PSMA5	chr1	109394042	109431448