JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PSMA5_chr1_109394042_109431448	0/0	t0004	3089	11	11	0	0	0	0	copy fasta	PSMA5	chr1	109394042	109431448
PSMA5_chr1_109394042_109431448	0/0	t0005	3089	10	10	0	0	0	0	copy fasta	PSMA5	chr1	109394042	109431448
PSMA5_chr1_109394042_109431448	0/0	t0006	3089	7	3	0	0	0	4	copy fasta	PSMA5	chr1	109394042	109431448
PSMA5_chr1_109394042_109431448	0/0	t0007	3089	6	0	1	3	1	1	copy fasta	PSMA5	chr1	109394042	109431448
PSMA5_chr1_109394042_109431448	0/0	t0008	3090	4	0	4	0	0	0	copy fasta	PSMA5	chr1	109394042	109431448
PSMA5_chr1_109394042_109431448	0/0	t0009	3091	3	1	1	1	0	0	copy fasta	PSMA5	chr1	109394042	109431448
PSMA5_chr1_109394042_109431448	0/0	t0010	3090	2	0	0	2	0	0	copy fasta	PSMA5	chr1	109394042	109431448
PSMA5_chr1_109394042_109431448	0/0	t0011	3090	2	0	0	0	0	2	copy fasta	PSMA5	chr1	109394042	109431448
PSMA5_chr1_109394042_109431448	0/0	t0012	3090	2	2	0	0	0	0	copy fasta	PSMA5	chr1	109394042	109431448
PSMA5_chr1_109394042_109431448	0/0	t0013	3090	2	0	2	0	0	0	copy fasta	PSMA5	chr1	109394042	109431448
PSMA5_chr1_109394042_109431448	0/0	t0014	3090	2	2	0	0	0	0	copy fasta	PSMA5	chr1	109394042	109431448
PSMA5_chr1_109394042_109431448	0/0	t0015	3090	2	0	2	0	0	0	copy fasta	PSMA5	chr1	109394042	109431448
PSMA5_chr1_109394042_109431448	0/0	t0016	3089	1	0	0	0	0	1	copy fasta	PSMA5	chr1	109394042	109431448
PSMA5_chr1_109394042_109431448	0/0	t0017	3089	1	0	1	0	0	0	copy fasta	PSMA5	chr1	109394042	109431448
PSMA5_chr1_109394042_109431448	0/0	t0018	3089	1	1	0	0	0	0	copy fasta	PSMA5	chr1	109394042	109431448
PSMA5_chr1_109394042_109431448	0/0	t0019	3090	1	0	0	1	0	0	copy fasta	PSMA5	chr1	109394042	109431448
PSMA5_chr1_109394042_109431448	0/0	t0020	3090	1	1	0	0	0	0	copy fasta	PSMA5	chr1	109394042	109431448
PSMA5_chr1_109394042_109431448	0/0	t0021	3174	1	1	0	0	0	0	copy fasta	PSMA5	chr1	109394042	109431448
PSMA5_chr1_109394042_109431448	0/0	t0022	3090	1	0	0	0	0	1	copy fasta	PSMA5	chr1	109394042	109431448
PSMA5_chr1_109394042_109431448	0/0	t0023	3090	1	1	0	0	0	0	copy fasta	PSMA5	chr1	109394042	109431448
PSMA5_chr1_109394042_109431448	0/0	t0024	3090	1	1	0	0	0	0	copy fasta	PSMA5	chr1	109394042	109431448
PSMA5_chr1_109394042_109431448	0/0	t0025	3090	1	1	0	0	0	0	copy fasta	PSMA5	chr1	109394042	109431448
PSMA5_chr1_109394042_109431448	0/0	t0026	3090	1	1	0	0	0	0	copy fasta	PSMA5	chr1	109394042	109431448
PSMA5_chr1_109394042_109431448	0/0	t0027	3090	1	1	0	0	0	0	copy fasta	PSMA5	chr1	109394042	109431448
PSMA5_chr1_109394042_109431448	0/0	t0028	3091	1	0	0	1	0	0	copy fasta	PSMA5	chr1	109394042	109431448
PSMA5_chr1_109394042_109431448	0/0	t0029	3075	1	0	0	1	0	0	copy fasta	PSMA5	chr1	109394042	109431448
PSMA5_chr1_109394042_109431448	0/0	t0030	3090	1	0	1	0	0	0	copy fasta	PSMA5	chr1	109394042	109431448
PSMA6_chr14_35287382_35322493	1/0	t0001	283	210	36	42	93	10	28	copy fasta	PSMA6	chr14	35287382	35322493
PSMA6_chr14_35287382_35322493	0/1	t0002	283	89	4	20	55	4	5	copy fasta	PSMA6	chr14	35287382	35322493
PSMA6_chr14_35287382_35322493	0/0	t0003	283	67	40	16	6	0	5	copy fasta	PSMA6	chr14	35287382	35322493
PSMA6_chr14_35287382_35322493	0/0	t0004	283	14	10	2	0	0	2	copy fasta	PSMA6	chr14	35287382	35322493
PSMA7_chr20_62131733_62148394	0/1	t0001	216	194	12	49	97	10	25	copy fasta	PSMA7	chr20	62131733	62148394
PSMA7_chr20_62131733_62148394	1/0	t0002	216	160	77	24	41	0	17	copy fasta	PSMA7	chr20	62131733	62148394
PSMA7_chr20_62131733_62148394	0/0	t0003	216	4	0	4	0	0	0	copy fasta	PSMA7	chr20	62131733	62148394
PSMA7_chr20_62131733_62148394	0/0	t0004	216	4	3	1	0	0	0	copy fasta	PSMA7	chr20	62131733	62148394
PSMA8_chr18_26128869_26198355	1/1	t0001	1042	187	65	35	68	7	10	copy fasta	PSMA8	chr18	26128869	26198355
PSMA8_chr18_26128869_26198355	0/0	t0002	1042	55	15	12	24	1	3	copy fasta	PSMA8	chr18	26128869	26198355
PSMA8_chr18_26128869_26198355	0/0	t0003	1042	20	0	0	17	0	3	copy fasta	PSMA8	chr18	26128869	26198355
PSMA8_chr18_26128869_26198355	0/0	t0004	1042	4	3	1	0	0	0	copy fasta	PSMA8	chr18	26128869	26198355
PSMA8_chr18_26128869_26198355	0/0	t0005	1042	1	1	0	0	0	0	copy fasta	PSMA8	chr18	26128869	26198355
PSMA8_chr18_26128869_26198355	0/0	t0006	1042	1	0	0	1	0	0	copy fasta	PSMA8	chr18	26128869	26198355
PSMB10_chr16_67929506_67941850	1/1	t0001	156	281	77	61	97	6	38	copy fasta	PSMB10	chr16	67929506	67941850
PSMB10_chr16_67929506_67941850	0/0	t0002	156	23	19	1	1	0	2	copy fasta	PSMB10	chr16	67929506	67941850
PSMB11_chr14_23037212_23049060	1/1	t0001	947	275	29	50	155	11	28	copy fasta	PSMB11	chr14	23037212	23049060
PSMB11_chr14_23037212_23049060	0/0	t0002	947	52	24	6	21	0	1	copy fasta	PSMB11	chr14	23037212	23049060
PSMB11_chr14_23037212_23049060	0/0	t0003	948	48	25	1	16	0	6	copy fasta	PSMB11	chr14	23037212	23049060
PSMB11_chr14_23037212_23049060	0/0	t0004	947	33	1	19	3	4	6	copy fasta	PSMB11	chr14	23037212	23049060
PSMB11_chr14_23037212_23049060	0/0	t0005	948	15	14	1	0	0	0	copy fasta	PSMB11	chr14	23037212	23049060
PSMB11_chr14_23037212_23049060	0/0	t0006	948	10	0	2	0	1	7	copy fasta	PSMB11	chr14	23037212	23049060
PSMB11_chr14_23037212_23049060	0/0	t0007	947	3	2	0	0	0	1	copy fasta	PSMB11	chr14	23037212	23049060