JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PSMB11_chr14_23037212_23049060	0/0	t0008	947	2	0	0	0	2	0	copy fasta	PSMB11	chr14	23037212	23049060
PSMB11_chr14_23037212_23049060	0/0	t0009	948	2	1	1	0	0	0	copy fasta	PSMB11	chr14	23037212	23049060
PSMB11_chr14_23037212_23049060	0/0	t0010	948	2	1	0	0	0	1	copy fasta	PSMB11	chr14	23037212	23049060
PSMB11_chr14_23037212_23049060	0/0	t0011	947	1	0	1	0	0	0	copy fasta	PSMB11	chr14	23037212	23049060
PSMB11_chr14_23037212_23049060	0/0	t0012	947	1	1	0	0	0	0	copy fasta	PSMB11	chr14	23037212	23049060
PSMB11_chr14_23037212_23049060	0/0	t0013	947	1	0	0	1	0	0	copy fasta	PSMB11	chr14	23037212	23049060
PSMB11_chr14_23037212_23049060	0/0	t0014	947	1	0	1	0	0	0	copy fasta	PSMB11	chr14	23037212	23049060
PSMB1_chr6_170530120_170558307	1/1	t0001	166	350	86	60	150	14	38	copy fasta	PSMB1	chr6	170530120	170558307
PSMB1_chr6_170530120_170558307	0/0	t0002	166	14	10	4	0	0	0	copy fasta	PSMB1	chr6	170530120	170558307
PSMB2_chr1_35594541_35646526	0/1	t0001	3820	62	7	12	27	3	12	copy fasta	PSMB2	chr1	35594541	35646526
PSMB2_chr1_35594541_35646526	0/0	t0002	3820	50	7	7	33	1	2	copy fasta	PSMB2	chr1	35594541	35646526
PSMB2_chr1_35594541_35646526	1/0	t0003	3821	34	4	13	11	1	4	copy fasta	PSMB2	chr1	35594541	35646526
PSMB2_chr1_35594541_35646526	0/0	t0004	3820	25	13	3	5	2	2	copy fasta	PSMB2	chr1	35594541	35646526
PSMB2_chr1_35594541_35646526	0/0	t0005	3821	21	11	4	1	2	3	copy fasta	PSMB2	chr1	35594541	35646526
PSMB2_chr1_35594541_35646526	0/0	t0006	3819	20	8	0	11	0	1	copy fasta	PSMB2	chr1	35594541	35646526
PSMB2_chr1_35594541_35646526	0/0	t0007	3821	19	5	6	8	0	0	copy fasta	PSMB2	chr1	35594541	35646526
PSMB2_chr1_35594541_35646526	0/0	t0008	3819	11	0	0	8	0	3	copy fasta	PSMB2	chr1	35594541	35646526
PSMB2_chr1_35594541_35646526	0/0	t0009	3819	5	5	0	0	0	0	copy fasta	PSMB2	chr1	35594541	35646526
PSMB2_chr1_35594541_35646526	0/0	t0010	3817	5	5	0	0	0	0	copy fasta	PSMB2	chr1	35594541	35646526
PSMB2_chr1_35594541_35646526	0/0	t0011	3820	4	4	0	0	0	0	copy fasta	PSMB2	chr1	35594541	35646526
PSMB2_chr1_35594541_35646526	0/0	t0012	3819	4	2	0	2	0	0	copy fasta	PSMB2	chr1	35594541	35646526
PSMB2_chr1_35594541_35646526	0/0	t0013	3820	4	0	2	1	0	1	copy fasta	PSMB2	chr1	35594541	35646526
PSMB2_chr1_35594541_35646526	0/0	t0014	3819	4	2	2	0	0	0	copy fasta	PSMB2	chr1	35594541	35646526
PSMB2_chr1_35594541_35646526	0/0	t0015	3819	3	0	0	3	0	0	copy fasta	PSMB2	chr1	35594541	35646526
PSMB2_chr1_35594541_35646526	0/0	t0016	3820	3	3	0	0	0	0	copy fasta	PSMB2	chr1	35594541	35646526
PSMB2_chr1_35594541_35646526	0/0	t0017	3820	3	3	0	0	0	0	copy fasta	PSMB2	chr1	35594541	35646526
PSMB2_chr1_35594541_35646526	0/0	t0018	3820	3	0	0	3	0	0	copy fasta	PSMB2	chr1	35594541	35646526
PSMB2_chr1_35594541_35646526	0/0	t0019	3820	2	2	0	0	0	0	copy fasta	PSMB2	chr1	35594541	35646526
PSMB2_chr1_35594541_35646526	0/0	t0020	3819	2	2	0	0	0	0	copy fasta	PSMB2	chr1	35594541	35646526
PSMB2_chr1_35594541_35646526	0/0	t0021	3820	2	2	0	0	0	0	copy fasta	PSMB2	chr1	35594541	35646526
PSMB2_chr1_35594541_35646526	0/0	t0022	3820	1	0	0	0	1	0	copy fasta	PSMB2	chr1	35594541	35646526
PSMB2_chr1_35594541_35646526	0/0	t0023	3821	1	0	0	1	0	0	copy fasta	PSMB2	chr1	35594541	35646526
PSMB2_chr1_35594541_35646526	0/0	t0024	3821	1	1	0	0	0	0	copy fasta	PSMB2	chr1	35594541	35646526
PSMB2_chr1_35594541_35646526	0/0	t0025	3820	1	1	0	0	0	0	copy fasta	PSMB2	chr1	35594541	35646526
PSMB2_chr1_35594541_35646526	0/0	t0026	3820	1	1	0	0	0	0	copy fasta	PSMB2	chr1	35594541	35646526
PSMB2_chr1_35594541_35646526	0/0	t0027	3819	1	1	0	0	0	0	copy fasta	PSMB2	chr1	35594541	35646526
PSMB2_chr1_35594541_35646526	0/0	t0028	3820	1	0	1	0	0	0	copy fasta	PSMB2	chr1	35594541	35646526
PSMB2_chr1_35594541_35646526	0/0	t0029	3820	1	0	1	0	0	0	copy fasta	PSMB2	chr1	35594541	35646526
PSMB2_chr1_35594541_35646526	0/0	t0030	3820	1	0	0	1	0	0	copy fasta	PSMB2	chr1	35594541	35646526
PSMB2_chr1_35594541_35646526	0/0	t0031	3821	1	1	0	0	0	0	copy fasta	PSMB2	chr1	35594541	35646526
PSMB2_chr1_35594541_35646526	0/0	t0032	3818	1	1	0	0	0	0	copy fasta	PSMB2	chr1	35594541	35646526
PSMB2_chr1_35594541_35646526	0/0	t0033	3820	1	0	0	1	0	0	copy fasta	PSMB2	chr1	35594541	35646526
PSMB2_chr1_35594541_35646526	0/0	t0034	3819	1	0	1	0	0	0	copy fasta	PSMB2	chr1	35594541	35646526
PSMB2_chr1_35594541_35646526	0/0	t0035	3821	1	1	0	0	0	0	copy fasta	PSMB2	chr1	35594541	35646526
PSMB3_chr17_38747741_38769225	0/1	t0001	145	357	59	68	178	13	38	copy fasta	PSMB3	chr17	38747741	38769225
PSMB3_chr17_38747741_38769225	0/0	t0002	145	61	26	10	16	3	6	copy fasta	PSMB3	chr17	38747741	38769225
PSMB3_chr17_38747741_38769225	0/0	t0003	145	11	11	0	0	0	0	copy fasta	PSMB3	chr17	38747741	38769225
PSMB3_chr17_38747741_38769225	0/0	t0004	145	1	0	0	1	0	0	copy fasta	PSMB3	chr17	38747741	38769225
PSMB3_chr17_38747741_38769225	0/0	t0005	145	1	0	0	1	0	0	copy fasta	PSMB3	chr17	38747741	38769225
PSMB4_chr1_151394573_151406937	0/0	t0001	124	396	94	72	182	8	40	copy fasta	PSMB4	chr1	151394573	151406937