JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PSMB5_chr14_23020856_23039900	1/1	t0001	253	401	98	74	163	16	48	copy fasta	PSMB5	chr14	23020856	23039900
PSMB5_chr14_23020856_23039900	0/0	t0002	253	2	2	0	0	0	0	copy fasta	PSMB5	chr14	23020856	23039900
PSMB5_chr14_23020856_23039900	0/0	t0003	253	1	0	0	1	0	0	copy fasta	PSMB5	chr14	23020856	23039900
PSMB6_chr17_4791164_4803495	1/1	t0001	105	454	94	74	222	16	46	copy fasta	PSMB6	chr17	4791164	4803495
PSMB7_chr9_124348465_124420442	1/1	t0001	151	408	94	70	190	8	44	copy fasta	PSMB7	chr9	124348465	124420442
PSMB8_chr6_32835717_32849047	0/1	t0001	294	458	89	88	220	18	42	copy fasta	PSMB8	chr6	32835717	32849047
PSMB8_chr6_32835717_32849047	0/0	t0002	294	6	6	0	0	0	0	copy fasta	PSMB8	chr6	32835717	32849047
PSMB8_chr6_32835717_32849047	0/0	t0003	294	2	0	0	0	0	2	copy fasta	PSMB8	chr6	32835717	32849047
PSMB8_chr6_32835717_32849047	0/0	t0004	294	2	0	0	0	0	2	copy fasta	PSMB8	chr6	32835717	32849047
PSMB8_chr6_32835717_32849047	0/0	t0005	294	1	1	0	0	0	0	copy fasta	PSMB8	chr6	32835717	32849047
PSMB9_chr6_32849192_32864851	0/1	t0001	358	231	50	43	107	4	26	copy fasta	PSMB9	chr6	32849192	32864851
PSMB9_chr6_32849192_32864851	0/0	t0002	355	158	34	31	74	5	14	copy fasta	PSMB9	chr6	32849192	32864851
PSMB9_chr6_32849192_32864851	0/0	t0003	360	53	1	11	31	5	5	copy fasta	PSMB9	chr6	32849192	32864851
PSMB9_chr6_32849192_32864851	0/0	t0004	358	7	2	3	0	2	0	copy fasta	PSMB9	chr6	32849192	32864851
PSMB9_chr6_32849192_32864851	0/0	t0005	355	3	3	0	0	0	0	copy fasta	PSMB9	chr6	32849192	32864851
PSMB9_chr6_32849192_32864851	0/0	t0006	355	2	2	0	0	0	0	copy fasta	PSMB9	chr6	32849192	32864851
PSMB9_chr6_32849192_32864851	0/0	t0007	355	1	0	0	0	0	1	copy fasta	PSMB9	chr6	32849192	32864851
PSMC1_chr14_90251553_90280429	0/0	t0001	3044	45	6	4	33	0	2	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0002	3040	40	3	10	16	2	9	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0003	3064	18	5	4	7	0	2	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0004	3042	18	7	6	3	0	2	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0005	3068	17	1	3	8	1	4	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0006	3066	15	1	0	9	3	2	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0007	3065	12	0	2	9	1	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0008	3070	11	0	3	8	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0009	3072	10	0	3	7	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0010	3040	10	10	0	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0011	3066	9	1	1	6	0	1	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0012	3072	9	0	0	8	0	1	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0013	3068	7	0	3	2	0	2	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0014	3055	7	7	0	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0015	3064	7	6	1	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0016	3068	6	0	0	6	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0017	3067	5	1	1	2	0	1	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0018	3076	5	2	2	1	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0019	3072	5	0	0	5	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0020	3068	5	0	2	2	0	1	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0021	3070	5	0	2	3	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0022	3062	5	5	0	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0023	3072	4	4	0	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0024	3063	3	0	2	0	0	1	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0025	3061	3	0	2	1	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0026	3074	3	1	1	0	1	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0027	3076	3	0	1	2	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0028	3074	3	0	2	0	1	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0029	3070	3	0	1	2	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0030	3072	3	0	1	2	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0031	3064	3	1	0	1	0	1	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0032	3064	3	2	1	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0033	3042	3	3	0	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429