JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PSMC1_chr14_90251553_90280429	0/0	t0034	3074	3	3	0	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0035	3065	2	2	0	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0036	3071	2	0	1	0	0	1	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0037	3070	2	0	0	2	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0038	3064	2	0	0	2	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0039	3078	2	0	2	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0040	3072	2	0	0	2	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0041	3066	2	0	0	2	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0042	3068	2	0	0	2	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0043	3042	2	0	1	0	0	1	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0044	3044	2	0	1	0	0	1	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0045	3044	2	0	1	0	0	1	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0046	3055	2	2	0	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0047	3060	2	2	0	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0048	3070	2	2	0	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	1/0	t0049	3068	2	1	0	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0050	3060	2	1	1	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0051	3067	1	1	0	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0052	3061	1	1	0	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0053	3069	1	1	0	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0054	3063	1	0	1	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0055	3062	1	0	0	1	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0056	3062	1	0	1	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0057	3062	1	1	0	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0058	3040	1	0	1	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0059	3040	1	0	0	0	0	1	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0060	3040	1	0	0	1	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0061	3076	1	0	1	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0062	3078	1	0	1	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0063	3072	1	0	0	0	0	1	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0064	3068	1	0	0	0	0	1	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0065	3103	1	0	0	1	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0066	3100	1	0	0	1	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/1	t0067	3076	1	0	0	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0068	3086	1	0	0	1	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0069	3080	1	0	0	0	0	1	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0070	3085	1	0	0	1	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0071	3078	1	0	0	1	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0072	3069	1	0	0	1	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0073	3068	1	0	0	1	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0074	3068	1	0	1	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0075	3059	1	0	0	0	1	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0076	3060	1	0	0	1	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0077	3064	1	0	0	0	0	1	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0078	3058	1	0	1	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0079	3085	1	0	0	1	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0080	3066	1	0	0	1	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0081	3044	1	0	0	0	0	1	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0082	3046	1	0	0	0	0	1	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0083	3042	1	1	0	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429