JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PSMC1_chr14_90251553_90280429	0/0	t0084	3053	1	1	0	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0085	3062	1	1	0	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0086	3061	1	1	0	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0087	3060	1	1	0	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0088	3059	1	1	0	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0089	3057	1	1	0	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0090	3073	1	1	0	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0091	3067	1	0	0	1	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0092	3046	1	1	0	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0093	3040	1	1	0	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0094	3080	1	1	0	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0095	3076	1	1	0	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0096	3066	1	1	0	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0097	3065	1	1	0	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0098	3074	1	1	0	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0099	3038	1	1	0	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	t0100	3040	1	1	0	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC2_chr7_103342643_103374395	0/1	t0001	1413	253	46	46	122	8	30	copy fasta	PSMC2	chr7	103342643	103374395
PSMC2_chr7_103342643_103374395	0/0	t0002	1413	88	8	18	49	1	12	copy fasta	PSMC2	chr7	103342643	103374395
PSMC2_chr7_103342643_103374395	0/0	t0003	1413	16	14	1	0	1	0	copy fasta	PSMC2	chr7	103342643	103374395
PSMC2_chr7_103342643_103374395	1/0	t0004	1411	16	14	1	0	0	0	copy fasta	PSMC2	chr7	103342643	103374395
PSMC2_chr7_103342643_103374395	0/0	t0005	1413	5	4	1	0	0	0	copy fasta	PSMC2	chr7	103342643	103374395
PSMC2_chr7_103342643_103374395	0/0	t0006	1413	1	0	0	1	0	0	copy fasta	PSMC2	chr7	103342643	103374395
PSMC2_chr7_103342643_103374395	0/0	t0007	1413	1	0	1	0	0	0	copy fasta	PSMC2	chr7	103342643	103374395
PSMC2_chr7_103342643_103374395	0/0	t0008	1413	1	0	0	0	1	0	copy fasta	PSMC2	chr7	103342643	103374395
PSMC2_chr7_103342643_103374395	0/0	t0009	1413	1	0	0	0	1	0	copy fasta	PSMC2	chr7	103342643	103374395
PSMC3IP_chr17_42567310_42582729	1/1	t0001	702	369	90	66	151	17	43	copy fasta	PSMC3IP	chr17	42567310	42582729
PSMC3IP_chr17_42567310_42582729	0/0	t0002	702	11	0	1	5	0	5	copy fasta	PSMC3IP	chr17	42567310	42582729
PSMC3IP_chr17_42567310_42582729	0/0	t0003	702	4	0	3	0	1	0	copy fasta	PSMC3IP	chr17	42567310	42582729
PSMC3IP_chr17_42567310_42582729	0/0	t0004	702	2	0	0	2	0	0	copy fasta	PSMC3IP	chr17	42567310	42582729
PSMC3IP_chr17_42567310_42582729	0/0	t0005	702	1	0	0	1	0	0	copy fasta	PSMC3IP	chr17	42567310	42582729
PSMC3IP_chr17_42567310_42582729	0/0	t0006	713	1	0	0	1	0	0	copy fasta	PSMC3IP	chr17	42567310	42582729
PSMC3_chr11_47413775_47431439	1/0	t0001	221	237	51	44	101	9	31	copy fasta	PSMC3	chr11	47413775	47431439
PSMC3_chr11_47413775_47431439	0/1	t0002	221	141	38	28	58	7	9	copy fasta	PSMC3	chr11	47413775	47431439
PSMC3_chr11_47413775_47431439	0/0	t0003	221	1	1	0	0	0	0	copy fasta	PSMC3	chr11	47413775	47431439
PSMC3_chr11_47413775_47431439	0/0	t0004	221	1	0	0	1	0	0	copy fasta	PSMC3	chr11	47413775	47431439
PSMC4_chr19_39966165_39986764	1/1	t0001	498	356	90	68	138	16	42	copy fasta	PSMC4	chr19	39966165	39986764
PSMC4_chr19_39966165_39986764	0/0	t0002	498	2	2	0	0	0	0	copy fasta	PSMC4	chr19	39966165	39986764
PSMC5_chr17_63822431_63837019	1/1	t0001	111	358	88	64	154	12	38	copy fasta	PSMC5	chr17	63822431	63837019
PSMC6_chr14_52702200_52733590	0/1	t0001	994	246	65	46	108	6	20	copy fasta	PSMC6	chr14	52702200	52733590
PSMC6_chr14_52702200_52733590	1/0	t0002	994	136	15	19	80	6	15	copy fasta	PSMC6	chr14	52702200	52733590
PSMC6_chr14_52702200_52733590	0/0	t0003	994	11	10	1	0	0	0	copy fasta	PSMC6	chr14	52702200	52733590
PSMC6_chr14_52702200_52733590	0/0	t0004	994	2	0	0	2	0	0	copy fasta	PSMC6	chr14	52702200	52733590
PSMC6_chr14_52702200_52733590	0/0	t0005	994	1	1	0	0	0	0	copy fasta	PSMC6	chr14	52702200	52733590
PSMC6_chr14_52702200_52733590	0/0	t0006	994	1	1	0	0	0	0	copy fasta	PSMC6	chr14	52702200	52733590
PSMC6_chr14_52702200_52733590	0/0	t0007	994	1	0	0	0	0	1	copy fasta	PSMC6	chr14	52702200	52733590
PSMD10_chrX_108079207_108096542	1/1	t0001	790	293	73	50	125	13	30	copy fasta	PSMD10	chrX	108079207	108096542
PSMD10_chrX_108079207_108096542	0/0	t0002	790	6	0	0	6	0	0	copy fasta	PSMD10	chrX	108079207	108096542
PSMD10_chrX_108079207_108096542	0/0	t0003	790	1	0	1	0	0	0	copy fasta	PSMD10	chrX	108079207	108096542
PSMD10_chrX_108079207_108096542	0/0	t0004	789	1	0	0	1	0	0	copy fasta	PSMD10	chrX	108079207	108096542