JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PSMD11_chr17_32439510_32488319	1/0	t0001	2582	108	10	26	49	1	21	copy fasta	PSMD11	chr17	32439510	32488319
PSMD11_chr17_32439510_32488319	0/0	t0002	2581	86	23	27	18	3	15	copy fasta	PSMD11	chr17	32439510	32488319
PSMD11_chr17_32439510_32488319	0/0	t0003	2582	38	19	7	7	2	3	copy fasta	PSMD11	chr17	32439510	32488319
PSMD11_chr17_32439510_32488319	0/0	t0004	2582	14	10	2	0	0	2	copy fasta	PSMD11	chr17	32439510	32488319
PSMD11_chr17_32439510_32488319	0/0	t0005	2581	11	11	0	0	0	0	copy fasta	PSMD11	chr17	32439510	32488319
PSMD11_chr17_32439510_32488319	0/0	t0006	2580	9	7	2	0	0	0	copy fasta	PSMD11	chr17	32439510	32488319
PSMD11_chr17_32439510_32488319	0/0	t0007	2581	7	7	0	0	0	0	copy fasta	PSMD11	chr17	32439510	32488319
PSMD11_chr17_32439510_32488319	0/0	t0008	2582	7	0	0	7	0	0	copy fasta	PSMD11	chr17	32439510	32488319
PSMD11_chr17_32439510_32488319	0/0	t0009	2580	3	1	1	1	0	0	copy fasta	PSMD11	chr17	32439510	32488319
PSMD11_chr17_32439510_32488319	0/1	t0010	2582	1	0	0	0	0	0	copy fasta	PSMD11	chr17	32439510	32488319
PSMD11_chr17_32439510_32488319	0/0	t0011	2581	1	0	1	0	0	0	copy fasta	PSMD11	chr17	32439510	32488319
PSMD11_chr17_32439510_32488319	0/0	t0012	2581	1	0	0	0	0	1	copy fasta	PSMD11	chr17	32439510	32488319
PSMD11_chr17_32439510_32488319	0/0	t0013	2580	1	1	0	0	0	0	copy fasta	PSMD11	chr17	32439510	32488319
PSMD11_chr17_32439510_32488319	0/0	t0014	2581	1	1	0	0	0	0	copy fasta	PSMD11	chr17	32439510	32488319
PSMD11_chr17_32439510_32488319	0/0	t0015	2582	1	1	0	0	0	0	copy fasta	PSMD11	chr17	32439510	32488319
PSMD11_chr17_32439510_32488319	0/0	t0016	2581	1	1	0	0	0	0	copy fasta	PSMD11	chr17	32439510	32488319
PSMD12_chr17_67332916_67371577	1/0	t0001	2986	117	29	24	52	1	10	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	t0002	2987	74	10	11	46	2	5	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	t0003	2985	42	0	12	15	4	11	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	t0004	2986	27	6	9	4	3	5	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	t0005	2985	24	8	1	12	0	3	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	t0006	2986	17	12	1	3	0	1	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	t0007	2985	10	0	0	10	0	0	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/1	t0008	2986	8	0	4	2	1	0	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	t0009	2985	7	0	2	2	1	2	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	t0010	2986	7	0	0	6	0	1	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	t0011	2986	7	0	0	7	0	0	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	t0012	2987	7	1	0	6	0	0	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	t0013	2987	6	6	0	0	0	0	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	t0014	2987	5	3	2	0	0	0	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	t0015	2986	4	0	2	0	1	1	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	t0016	2984	4	0	0	3	1	0	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	t0017	2981	3	0	1	0	0	2	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	t0018	2986	3	0	2	0	0	1	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	t0019	2987	2	0	1	0	0	1	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	t0020	2984	2	2	0	0	0	0	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	t0021	2986	1	0	0	0	0	1	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	t0022	2985	1	1	0	0	0	0	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	t0023	2985	1	1	0	0	0	0	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	t0024	2985	1	0	0	1	0	0	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	t0025	2986	1	1	0	0	0	0	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	t0026	2987	1	0	1	0	0	0	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	t0027	2986	1	1	0	0	0	0	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	t0028	2986	1	0	0	0	0	1	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	t0029	2984	1	0	1	0	0	0	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	t0030	2985	1	0	0	1	0	0	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	t0031	2985	1	0	1	0	0	0	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	t0032	2985	1	1	0	0	0	0	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	t0033	2986	1	1	0	0	0	0	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	t0034	2986	1	1	0	0	0	0	copy fasta	PSMD12	chr17	67332916	67371577