JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PSMD12_chr17_67332916_67371577	0/0	t0035	2987	1	0	0	0	0	1	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	t0036	2988	1	0	0	1	0	0	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	t0037	2987	1	0	0	1	0	0	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	t0038	2987	1	1	0	0	0	0	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	t0039	2988	1	0	1	0	0	0	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	t0040	2985	1	0	0	1	0	0	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	t0041	2986	1	1	0	0	0	0	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	t0042	2986	1	0	0	1	0	0	copy fasta	PSMD12	chr17	67332916	67371577
PSMD13_chr11_231976_257984	1/0	t0001	459	231	37	45	96	10	42	copy fasta	PSMD13	chr11	231976	257984
PSMD13_chr11_231976_257984	0/0	t0002	459	106	17	11	76	0	2	copy fasta	PSMD13	chr11	231976	257984
PSMD13_chr11_231976_257984	0/0	t0003	459	32	5	17	0	5	5	copy fasta	PSMD13	chr11	231976	257984
PSMD13_chr11_231976_257984	0/0	t0004	459	26	2	0	23	0	1	copy fasta	PSMD13	chr11	231976	257984
PSMD13_chr11_231976_257984	0/0	t0005	459	23	22	1	0	0	0	copy fasta	PSMD13	chr11	231976	257984
PSMD13_chr11_231976_257984	0/0	t0006	459	20	9	7	3	1	0	copy fasta	PSMD13	chr11	231976	257984
PSMD13_chr11_231976_257984	0/0	t0007	459	5	4	1	0	0	0	copy fasta	PSMD13	chr11	231976	257984
PSMD13_chr11_231976_257984	0/0	t0008	459	3	0	0	3	0	0	copy fasta	PSMD13	chr11	231976	257984
PSMD13_chr11_231976_257984	0/0	t0009	459	1	1	0	0	0	0	copy fasta	PSMD13	chr11	231976	257984
PSMD13_chr11_231976_257984	0/0	t0010	459	1	1	0	0	0	0	copy fasta	PSMD13	chr11	231976	257984
PSMD13_chr11_231976_257984	0/1	t0011	459	1	0	0	0	0	0	copy fasta	PSMD13	chr11	231976	257984
PSMD13_chr11_231976_257984	0/0	t0012	459	1	0	0	1	0	0	copy fasta	PSMD13	chr11	231976	257984
PSMD14_chr2_161303425_161416717	1/0	t0001	635	138	29	14	67	5	22	copy fasta	PSMD14	chr2	161303425	161416717
PSMD14_chr2_161303425_161416717	0/1	t0002	635	124	42	16	49	7	9	copy fasta	PSMD14	chr2	161303425	161416717
PSMD14_chr2_161303425_161416717	0/0	t0003	635	5	0	4	0	0	1	copy fasta	PSMD14	chr2	161303425	161416717
PSMD14_chr2_161303425_161416717	0/0	t0004	635	1	1	0	0	0	0	copy fasta	PSMD14	chr2	161303425	161416717
PSMD1_chr2_231051867_231177827	0/0	t0001	462	194	44	22	111	2	15	copy fasta	PSMD1	chr2	231051867	231177827
PSMD1_chr2_231051867_231177827	1/1	t0002	462	104	9	21	53	4	15	copy fasta	PSMD1	chr2	231051867	231177827
PSMD1_chr2_231051867_231177827	0/0	t0003	462	58	27	5	17	4	5	copy fasta	PSMD1	chr2	231051867	231177827
PSMD1_chr2_231051867_231177827	0/0	t0004	462	5	5	0	0	0	0	copy fasta	PSMD1	chr2	231051867	231177827
PSMD1_chr2_231051867_231177827	0/0	t0005	462	1	0	0	0	0	1	copy fasta	PSMD1	chr2	231051867	231177827
PSMD1_chr2_231051867_231177827	0/0	t0006	462	1	1	0	0	0	0	copy fasta	PSMD1	chr2	231051867	231177827
PSMD1_chr2_231051867_231177827	0/0	t0007	462	1	0	0	1	0	0	copy fasta	PSMD1	chr2	231051867	231177827
PSMD2_chr3_184294241_184314050	1/0	t0001	187	286	75	50	133	8	19	copy fasta	PSMD2	chr3	184294241	184314050
PSMD2_chr3_184294241_184314050	0/1	t0002	187	123	15	17	51	10	29	copy fasta	PSMD2	chr3	184294241	184314050
PSMD2_chr3_184294241_184314050	0/0	t0003	187	5	0	5	0	0	0	copy fasta	PSMD2	chr3	184294241	184314050
PSMD3_chr17_39975807_40002959	1/0	t0001	543	191	28	32	96	5	29	copy fasta	PSMD3	chr17	39975807	40002959
PSMD3_chr17_39975807_40002959	0/1	t0002	543	170	20	34	97	5	13	copy fasta	PSMD3	chr17	39975807	40002959
PSMD3_chr17_39975807_40002959	0/0	t0003	543	37	22	7	0	4	4	copy fasta	PSMD3	chr17	39975807	40002959
PSMD3_chr17_39975807_40002959	0/0	t0004	543	12	12	0	0	0	0	copy fasta	PSMD3	chr17	39975807	40002959
PSMD3_chr17_39975807_40002959	0/0	t0005	543	4	4	0	0	0	0	copy fasta	PSMD3	chr17	39975807	40002959
PSMD3_chr17_39975807_40002959	0/0	t0006	543	2	1	1	0	0	0	copy fasta	PSMD3	chr17	39975807	40002959
PSMD3_chr17_39975807_40002959	0/0	t0007	543	1	0	0	1	0	0	copy fasta	PSMD3	chr17	39975807	40002959
PSMD3_chr17_39975807_40002959	0/0	t0008	543	1	1	0	0	0	0	copy fasta	PSMD3	chr17	39975807	40002959
PSMD4_chr1_151249734_151272479	1/1	t0001	186	418	93	73	190	18	42	copy fasta	PSMD4	chr1	151249734	151272479
PSMD4_chr1_151249734_151272479	0/0	t0002	186	1	1	0	0	0	0	copy fasta	PSMD4	chr1	151249734	151272479
PSMD4_chr1_151249734_151272479	0/0	t0003	186	1	0	1	0	0	0	copy fasta	PSMD4	chr1	151249734	151272479
PSMD5_chr9_120811053_120847922	1/1	t0001	1867	302	74	36	161	7	22	copy fasta	PSMD5	chr9	120811053	120847922
PSMD5_chr9_120811053_120847922	0/0	t0002	1867	31	4	12	8	3	4	copy fasta	PSMD5	chr9	120811053	120847922
PSMD5_chr9_120811053_120847922	0/0	t0003	1867	6	6	0	0	0	0	copy fasta	PSMD5	chr9	120811053	120847922
PSMD5_chr9_120811053_120847922	0/0	t0004	1867	4	0	0	4	0	0	copy fasta	PSMD5	chr9	120811053	120847922
PSMD5_chr9_120811053_120847922	0/0	t0005	1867	3	3	0	0	0	0	copy fasta	PSMD5	chr9	120811053	120847922