JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PSMD5_chr9_120811053_120847922	0/0	t0006	1867	2	0	1	0	0	1	copy fasta	PSMD5	chr9	120811053	120847922
PSMD5_chr9_120811053_120847922	0/0	t0007	1868	2	2	0	0	0	0	copy fasta	PSMD5	chr9	120811053	120847922
PSMD5_chr9_120811053_120847922	0/0	t0008	1867	1	0	0	1	0	0	copy fasta	PSMD5	chr9	120811053	120847922
PSMD5_chr9_120811053_120847922	0/0	t0009	1867	1	0	1	0	0	0	copy fasta	PSMD5	chr9	120811053	120847922
PSMD5_chr9_120811053_120847922	0/0	t0010	1867	1	0	0	0	0	1	copy fasta	PSMD5	chr9	120811053	120847922
PSMD5_chr9_120811053_120847922	0/0	t0011	1868	1	1	0	0	0	0	copy fasta	PSMD5	chr9	120811053	120847922
PSMD5_chr9_120811053_120847922	0/0	t0012	1867	1	1	0	0	0	0	copy fasta	PSMD5	chr9	120811053	120847922
PSMD5_chr9_120811053_120847922	0/0	t0013	1867	1	1	0	0	0	0	copy fasta	PSMD5	chr9	120811053	120847922
PSMD6_chr3_64005551_64028494	1/1	t0001	193	293	52	61	135	15	28	copy fasta	PSMD6	chr3	64005551	64028494
PSMD6_chr3_64005551_64028494	0/0	t0002	193	86	22	18	35	3	8	copy fasta	PSMD6	chr3	64005551	64028494
PSMD6_chr3_64005551_64028494	0/0	t0003	193	39	18	0	20	0	1	copy fasta	PSMD6	chr3	64005551	64028494
PSMD6_chr3_64005551_64028494	0/0	t0004	193	7	0	0	6	0	1	copy fasta	PSMD6	chr3	64005551	64028494
PSMD6_chr3_64005551_64028494	0/0	t0005	193	1	0	1	0	0	0	copy fasta	PSMD6	chr3	64005551	64028494
PSMD7_chr16_74291814_74311288	1/1	t0001	657	445	93	78	208	18	46	copy fasta	PSMD7	chr16	74291814	74311288
PSMD7_chr16_74291814_74311288	0/0	t0002	657	2	2	0	0	0	0	copy fasta	PSMD7	chr16	74291814	74311288
PSMD7_chr16_74291814_74311288	0/0	t0003	657	1	1	0	0	0	0	copy fasta	PSMD7	chr16	74291814	74311288
PSMD8_chr19_38369571_38388824	1/1	t0001	466	423	86	78	197	16	44	copy fasta	PSMD8	chr19	38369571	38388824
PSMD8_chr19_38369571_38388824	0/0	t0002	466	1	0	0	1	0	0	copy fasta	PSMD8	chr19	38369571	38388824
PSMD9_chr12_121883790_121923297	0/1	t0001	2055	134	37	18	58	7	13	copy fasta	PSMD9	chr12	121883790	121923297
PSMD9_chr12_121883790_121923297	0/0	t0002	2053	113	0	28	66	7	12	copy fasta	PSMD9	chr12	121883790	121923297
PSMD9_chr12_121883790_121923297	1/0	t0003	2054	39	6	3	22	1	6	copy fasta	PSMD9	chr12	121883790	121923297
PSMD9_chr12_121883790_121923297	0/0	t0004	2055	36	12	2	12	0	10	copy fasta	PSMD9	chr12	121883790	121923297
PSMD9_chr12_121883790_121923297	0/0	t0005	2054	17	1	3	11	0	2	copy fasta	PSMD9	chr12	121883790	121923297
PSMD9_chr12_121883790_121923297	0/0	t0006	2054	13	10	3	0	0	0	copy fasta	PSMD9	chr12	121883790	121923297
PSMD9_chr12_121883790_121923297	0/0	t0007	2054	13	1	11	0	1	0	copy fasta	PSMD9	chr12	121883790	121923297
PSMD9_chr12_121883790_121923297	0/0	t0008	2054	7	0	0	7	0	0	copy fasta	PSMD9	chr12	121883790	121923297
PSMD9_chr12_121883790_121923297	0/0	t0009	2053	4	0	1	0	0	3	copy fasta	PSMD9	chr12	121883790	121923297
PSMD9_chr12_121883790_121923297	0/0	t0010	2055	4	4	0	0	0	0	copy fasta	PSMD9	chr12	121883790	121923297
PSMD9_chr12_121883790_121923297	0/0	t0011	2045	4	4	0	0	0	0	copy fasta	PSMD9	chr12	121883790	121923297
PSMD9_chr12_121883790_121923297	0/0	t0012	2055	3	3	0	0	0	0	copy fasta	PSMD9	chr12	121883790	121923297
PSMD9_chr12_121883790_121923297	0/0	t0013	2054	3	3	0	0	0	0	copy fasta	PSMD9	chr12	121883790	121923297
PSMD9_chr12_121883790_121923297	0/0	t0014	2054	2	2	0	0	0	0	copy fasta	PSMD9	chr12	121883790	121923297
PSMD9_chr12_121883790_121923297	0/0	t0015	2054	2	2	0	0	0	0	copy fasta	PSMD9	chr12	121883790	121923297
PSMD9_chr12_121883790_121923297	0/0	t0016	2053	2	0	0	2	0	0	copy fasta	PSMD9	chr12	121883790	121923297
PSMD9_chr12_121883790_121923297	0/0	t0017	2055	1	1	0	0	0	0	copy fasta	PSMD9	chr12	121883790	121923297
PSMD9_chr12_121883790_121923297	0/0	t0018	2055	1	0	1	0	0	0	copy fasta	PSMD9	chr12	121883790	121923297
PSME1_chr14_24131194_24143962	1/1	t0001	216	380	69	74	178	16	41	copy fasta	PSME1	chr14	24131194	24143962
PSME1_chr14_24131194_24143962	0/0	t0002	217	37	27	7	0	0	3	copy fasta	PSME1	chr14	24131194	24143962
PSME1_chr14_24131194_24143962	0/0	t0003	216	1	0	1	0	0	0	copy fasta	PSME1	chr14	24131194	24143962
PSME2_chr14_24138365_24151610	1/1	t0001	74	419	95	76	184	18	44	copy fasta	PSME2	chr14	24138365	24151610
PSME2_chr14_24138365_24151610	0/0	t0002	74	1	1	0	0	0	0	copy fasta	PSME2	chr14	24138365	24151610
PSME3IP1_chr16_57147466_57191039	0/1	t0001	2059	319	70	51	147	13	37	copy fasta	PSME3IP1	chr16	57147466	57191039
PSME3IP1_chr16_57147466_57191039	1/0	t0002	2059	15	2	5	5	1	1	copy fasta	PSME3IP1	chr16	57147466	57191039
PSME3IP1_chr16_57147466_57191039	0/0	t0003	2060	10	10	0	0	0	0	copy fasta	PSME3IP1	chr16	57147466	57191039
PSME3IP1_chr16_57147466_57191039	0/0	t0004	2059	4	0	0	4	0	0	copy fasta	PSME3IP1	chr16	57147466	57191039
PSME3IP1_chr16_57147466_57191039	0/0	t0005	2059	3	3	0	0	0	0	copy fasta	PSME3IP1	chr16	57147466	57191039
PSME3IP1_chr16_57147466_57191039	0/0	t0006	2059	2	0	1	0	0	1	copy fasta	PSME3IP1	chr16	57147466	57191039
PSME3IP1_chr16_57147466_57191039	0/0	t0007	2059	2	0	2	0	0	0	copy fasta	PSME3IP1	chr16	57147466	57191039
PSME3IP1_chr16_57147466_57191039	0/0	t0008	2059	2	0	0	2	0	0	copy fasta	PSME3IP1	chr16	57147466	57191039
PSME3IP1_chr16_57147466_57191039	0/0	t0009	2059	2	0	0	2	0	0	copy fasta	PSME3IP1	chr16	57147466	57191039