Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
ATP8A2_chr13_25366974_26030851	0/0	t0016	6105	2	2	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0017	6109	2	0	2	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0018	6104	2	0	2	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0019	6105	2	2	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0020	6105	2	1	0	0	1	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0021	6106	2	0	2	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0022	6106	2	0	1	0	1	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0023	6107	2	2	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0024	6108	2	2	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0025	6106	1	1	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0026	6106	1	1	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0027	6106	1	0	0	1	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0028	6105	1	1	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0029	6106	1	0	0	1	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0030	6108	1	1	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0031	6106	1	0	1	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0032	6106	1	1	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0033	6107	1	1	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0034	6106	1	1	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0035	6106	1	1	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0036	6105	1	1	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0037	6104	1	1	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0038	6108	1	1	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0039	6104	1	1	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0040	6104	1	0	0	0	1	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0041	6106	1	1	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0042	6105	1	0	1	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0043	6106	1	1	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0044	6105	1	1	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0045	6105	1	1	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0046	6104	1	1	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0047	6104	1	1	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0048	6109	1	1	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0049	6108	1	1	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0050	6108	1	1	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0051	6104	1	0	1	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0052	6106	1	1	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0053	6105	1	0	1	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0054	6105	1	1	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0055	6105	1	0	1	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0056	6104	1	1	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0057	6104	1	1	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0058	6104	1	1	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0059	6107	1	1	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0060	6106	1	0	1	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/1	t0061	6104	1	0	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0062	6104	1	1	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0063	6106	1	0	0	1	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0064	6105	1	1	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0065	6106	1	0	1	0	0	copy fasta	ATP8A2	chr13	25366974	26030851