JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PSME3IP1_chr16_57147466_57191039	0/0	t0010	2059	1	0	1	0	0	0	copy fasta	PSME3IP1	chr16	57147466	57191039
PSME3IP1_chr16_57147466_57191039	0/0	t0011	2059	1	0	0	1	0	0	copy fasta	PSME3IP1	chr16	57147466	57191039
PSME3IP1_chr16_57147466_57191039	0/0	t0012	2059	1	0	0	0	0	1	copy fasta	PSME3IP1	chr16	57147466	57191039
PSME3IP1_chr16_57147466_57191039	0/0	t0013	2059	1	1	0	0	0	0	copy fasta	PSME3IP1	chr16	57147466	57191039
PSME3IP1_chr16_57147466_57191039	0/0	t0014	2059	1	0	0	1	0	0	copy fasta	PSME3IP1	chr16	57147466	57191039
PSME3_chr17_42828397_42848760	1/1	t0001	2418	233	71	52	60	8	40	copy fasta	PSME3	chr17	42828397	42848760
PSME3_chr17_42828397_42848760	0/0	t0002	2418	5	5	0	0	0	0	copy fasta	PSME3	chr17	42828397	42848760
PSME3_chr17_42828397_42848760	0/0	t0003	2418	4	1	1	0	2	0	copy fasta	PSME3	chr17	42828397	42848760
PSME3_chr17_42828397_42848760	0/0	t0004	2418	3	3	0	0	0	0	copy fasta	PSME3	chr17	42828397	42848760
PSME3_chr17_42828397_42848760	0/0	t0005	2418	3	3	0	0	0	0	copy fasta	PSME3	chr17	42828397	42848760
PSME3_chr17_42828397_42848760	0/0	t0006	2418	3	0	0	3	0	0	copy fasta	PSME3	chr17	42828397	42848760
PSME3_chr17_42828397_42848760	0/0	t0007	2418	1	0	0	1	0	0	copy fasta	PSME3	chr17	42828397	42848760
PSME3_chr17_42828397_42848760	0/0	t0008	2418	1	0	0	1	0	0	copy fasta	PSME3	chr17	42828397	42848760
PSME3_chr17_42828397_42848760	0/0	t0009	2418	1	1	0	0	0	0	copy fasta	PSME3	chr17	42828397	42848760
PSME3_chr17_42828397_42848760	0/0	t0010	2418	1	1	0	0	0	0	copy fasta	PSME3	chr17	42828397	42848760
PSME3_chr17_42828397_42848760	0/0	t0011	2418	1	0	0	1	0	0	copy fasta	PSME3	chr17	42828397	42848760
PSME3_chr17_42828397_42848760	0/0	t0012	2418	1	1	0	0	0	0	copy fasta	PSME3	chr17	42828397	42848760
PSME3_chr17_42828397_42848760	0/0	t0013	2418	1	1	0	0	0	0	copy fasta	PSME3	chr17	42828397	42848760
PSME3_chr17_42828397_42848760	0/0	t0014	2418	1	0	0	1	0	0	copy fasta	PSME3	chr17	42828397	42848760
PSME3_chr17_42828397_42848760	0/0	t0015	2418	1	1	0	0	0	0	copy fasta	PSME3	chr17	42828397	42848760
PSME3_chr17_42828397_42848760	0/0	t0016	2418	1	0	0	1	0	0	copy fasta	PSME3	chr17	42828397	42848760
PSME3_chr17_42828397_42848760	0/0	t0017	2418	1	0	0	0	0	1	copy fasta	PSME3	chr17	42828397	42848760
PSME3_chr17_42828397_42848760	0/0	t0018	2418	1	0	1	0	0	0	copy fasta	PSME3	chr17	42828397	42848760
PSME3_chr17_42828397_42848760	0/0	t0019	2418	1	0	0	0	0	1	copy fasta	PSME3	chr17	42828397	42848760
PSME4_chr2_53859069_53975993	1/0	t0001	1719	197	44	37	87	8	20	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/1	t0002	1717	125	17	20	66	3	18	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	t0003	1719	33	21	6	3	2	1	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	t0004	1718	7	0	0	7	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	t0005	1719	4	4	0	0	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	t0006	1718	4	4	0	0	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	t0007	1720	3	0	0	3	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	t0008	1717	2	0	0	2	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	t0009	1719	2	0	0	2	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	t0010	1717	1	1	0	0	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	t0011	1717	1	0	0	0	0	1	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	t0012	1718	1	1	0	0	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	t0013	1719	1	1	0	0	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	t0014	1719	1	0	0	0	1	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	t0015	1720	1	1	0	0	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	t0016	1718	1	0	1	0	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSMF1_chr20_1113602_1177246	0/0	t0001	7339	66	23	11	18	5	9	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0002	7339	54	0	5	42	3	4	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0003	7339	37	1	12	16	1	7	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0004	7339	24	1	10	6	1	6	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0005	7339	18	11	2	4	0	1	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0006	7339	11	1	2	5	1	2	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0007	7339	7	4	1	2	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0008	7339	6	1	1	3	0	1	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0009	7339	5	0	5	0	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0010	7339	5	4	1	0	0	0	copy fasta	PSMF1	chr20	1113602	1177246