JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PSMF1_chr20_1113602_1177246	0/0	t0011	7339	4	4	0	0	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0012	7339	4	0	2	0	2	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0013	7339	4	3	1	0	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0014	7337	3	3	0	0	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0015	7339	3	0	0	1	0	2	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0016	7339	3	3	0	0	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0017	7339	3	0	1	0	0	2	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0018	7337	3	0	0	3	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0019	7339	3	0	0	3	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0020	7662	3	2	1	0	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0021	7662	3	3	0	0	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0022	7339	3	0	0	0	1	2	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0023	7339	2	2	0	0	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0024	7339	2	2	0	0	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0025	7339	2	2	0	0	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0026	7339	2	0	1	0	1	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0027	7339	2	0	0	2	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0028	7340	2	2	0	0	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0029	7339	2	2	0	0	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0030	7339	2	0	0	2	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0031	7339	2	0	1	0	1	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0032	7339	2	2	0	0	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0033	7339	1	1	0	0	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0034	7339	1	0	0	1	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0035	7339	1	0	0	1	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0036	7337	1	0	0	1	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0037	7339	1	0	0	1	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0038	7339	1	0	0	1	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0039	7339	1	1	0	0	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0040	7339	1	0	0	1	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0041	7339	1	0	1	0	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0042	7339	1	1	0	0	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0043	7339	1	1	0	0	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0044	7339	1	0	1	0	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0045	7339	1	0	1	0	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0046	7339	1	0	0	1	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0047	7339	1	0	1	0	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0048	7339	1	0	0	1	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0049	7338	1	0	0	1	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0050	7339	1	1	0	0	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0051	7339	1	1	0	0	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0052	7340	1	1	0	0	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0053	7339	1	1	0	0	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0054	7337	1	1	0	0	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0055	7339	1	1	0	0	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0056	7339	1	0	0	0	0	1	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0057	7339	1	1	0	0	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0058	7339	1	0	0	0	1	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0059	7339	1	1	0	0	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0060	7339	1	1	0	0	0	0	copy fasta	PSMF1	chr20	1113602	1177246