JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PSMF1_chr20_1113602_1177246	0/0	t0061	7339	1	0	0	0	0	1	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0062	7663	1	1	0	0	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0063	7339	1	0	0	0	1	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0064	7339	1	1	0	0	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0065	7339	1	1	0	0	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	t0066	7339	1	0	1	0	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMG1_chr21_39169769_39188451	0/0	t0001	888	180	51	28	75	12	14	copy fasta	PSMG1	chr21	39169769	39188451
PSMG1_chr21_39169769_39188451	0/0	t0002	888	92	0	9	70	1	12	copy fasta	PSMG1	chr21	39169769	39188451
PSMG1_chr21_39169769_39188451	0/1	t0003	888	57	24	19	3	5	5	copy fasta	PSMG1	chr21	39169769	39188451
PSMG1_chr21_39169769_39188451	0/0	t0004	888	35	3	4	21	0	7	copy fasta	PSMG1	chr21	39169769	39188451
PSMG1_chr21_39169769_39188451	0/0	t0005	888	6	0	0	6	0	0	copy fasta	PSMG1	chr21	39169769	39188451
PSMG1_chr21_39169769_39188451	0/0	t0006	888	5	0	1	4	0	0	copy fasta	PSMG1	chr21	39169769	39188451
PSMG1_chr21_39169769_39188451	0/0	t0007	888	4	4	0	0	0	0	copy fasta	PSMG1	chr21	39169769	39188451
PSMG1_chr21_39169769_39188451	0/0	t0008	888	2	2	0	0	0	0	copy fasta	PSMG1	chr21	39169769	39188451
PSMG1_chr21_39169769_39188451	0/0	t0009	888	2	2	0	0	0	0	copy fasta	PSMG1	chr21	39169769	39188451
PSMG1_chr21_39169769_39188451	0/0	t0010	888	2	0	2	0	0	0	copy fasta	PSMG1	chr21	39169769	39188451
PSMG1_chr21_39169769_39188451	0/0	t0011	888	1	0	0	1	0	0	copy fasta	PSMG1	chr21	39169769	39188451
PSMG1_chr21_39169769_39188451	0/0	t0012	888	1	0	0	1	0	0	copy fasta	PSMG1	chr21	39169769	39188451
PSMG1_chr21_39169769_39188451	1/0	t0013	888	1	0	0	0	0	0	copy fasta	PSMG1	chr21	39169769	39188451
PSMG1_chr21_39169769_39188451	0/0	t0014	888	1	1	0	0	0	0	copy fasta	PSMG1	chr21	39169769	39188451
PSMG1_chr21_39169769_39188451	0/0	t0015	888	1	0	0	1	0	0	copy fasta	PSMG1	chr21	39169769	39188451
PSMG1_chr21_39169769_39188451	0/0	t0016	888	1	0	1	0	0	0	copy fasta	PSMG1	chr21	39169769	39188451
PSMG1_chr21_39169769_39188451	0/0	t0017	888	1	1	0	0	0	0	copy fasta	PSMG1	chr21	39169769	39188451
PSMG2_chr18_12698042_12730740	1/1	t0001	276	296	63	50	133	9	39	copy fasta	PSMG2	chr18	12698042	12730740
PSMG2_chr18_12698042_12730740	0/0	t0002	276	96	20	20	46	3	7	copy fasta	PSMG2	chr18	12698042	12730740
PSMG2_chr18_12698042_12730740	0/0	t0003	276	6	6	0	0	0	0	copy fasta	PSMG2	chr18	12698042	12730740
PSMG2_chr18_12698042_12730740	0/0	t0004	276	2	2	0	0	0	0	copy fasta	PSMG2	chr18	12698042	12730740
PSMG2_chr18_12698042_12730740	0/0	t0005	276	1	0	0	1	0	0	copy fasta	PSMG2	chr18	12698042	12730740
PSMG2_chr18_12698042_12730740	0/0	t0006	276	1	1	0	0	0	0	copy fasta	PSMG2	chr18	12698042	12730740
PSMG3_chr7_1562332_1575032	1/0	t0001	1060	281	55	61	120	14	30	copy fasta	PSMG3	chr7	1562332	1575032
PSMG3_chr7_1562332_1575032	0/0	t0002	1061	32	7	5	13	0	7	copy fasta	PSMG3	chr7	1562332	1575032
PSMG3_chr7_1562332_1575032	0/0	t0003	1057	12	5	7	0	0	0	copy fasta	PSMG3	chr7	1562332	1575032
PSMG3_chr7_1562332_1575032	0/0	t0004	1058	8	8	0	0	0	0	copy fasta	PSMG3	chr7	1562332	1575032
PSMG3_chr7_1562332_1575032	0/0	t0005	1060	7	0	0	3	0	4	copy fasta	PSMG3	chr7	1562332	1575032
PSMG3_chr7_1562332_1575032	0/0	t0006	1061	4	4	0	0	0	0	copy fasta	PSMG3	chr7	1562332	1575032
PSMG3_chr7_1562332_1575032	0/0	t0007	1061	4	0	0	4	0	0	copy fasta	PSMG3	chr7	1562332	1575032
PSMG3_chr7_1562332_1575032	0/1	t0008	1060	4	0	2	0	0	1	copy fasta	PSMG3	chr7	1562332	1575032
PSMG3_chr7_1562332_1575032	0/0	t0009	1059	3	3	0	0	0	0	copy fasta	PSMG3	chr7	1562332	1575032
PSMG3_chr7_1562332_1575032	0/0	t0010	1060	2	2	0	0	0	0	copy fasta	PSMG3	chr7	1562332	1575032
PSMG3_chr7_1562332_1575032	0/0	t0011	1059	1	0	1	0	0	0	copy fasta	PSMG3	chr7	1562332	1575032
PSMG3_chr7_1562332_1575032	0/0	t0012	1058	1	1	0	0	0	0	copy fasta	PSMG3	chr7	1562332	1575032
PSMG3_chr7_1562332_1575032	0/0	t0013	1059	1	1	0	0	0	0	copy fasta	PSMG3	chr7	1562332	1575032
PSMG3_chr7_1562332_1575032	0/0	t0014	1060	1	1	0	0	0	0	copy fasta	PSMG3	chr7	1562332	1575032
PSMG3_chr7_1562332_1575032	0/0	t0015	1059	1	0	1	0	0	0	copy fasta	PSMG3	chr7	1562332	1575032
PSMG3_chr7_1562332_1575032	0/0	t0016	1060	1	0	0	1	0	0	copy fasta	PSMG3	chr7	1562332	1575032
PSMG3_chr7_1562332_1575032	0/0	t0017	1060	1	1	0	0	0	0	copy fasta	PSMG3	chr7	1562332	1575032
PSMG3_chr7_1562332_1575032	0/0	t0018	1060	1	0	1	0	0	0	copy fasta	PSMG3	chr7	1562332	1575032
PSMG3_chr7_1562332_1575032	0/0	t0019	1060	1	1	0	0	0	0	copy fasta	PSMG3	chr7	1562332	1575032
PSMG3_chr7_1562332_1575032	0/0	t0020	1061	1	1	0	0	0	0	copy fasta	PSMG3	chr7	1562332	1575032
PSMG3_chr7_1562332_1575032	0/0	t0021	1060	1	0	0	1	0	0	copy fasta	PSMG3	chr7	1562332	1575032