JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PSMG4_chr6_3253947_3273049	0/1	t0001	414	316	87	54	126	15	33	copy fasta	PSMG4	chr6	3253947	3273049
PSMG4_chr6_3253947_3273049	1/0	t0002	414	95	5	16	62	1	10	copy fasta	PSMG4	chr6	3253947	3273049
PSMG4_chr6_3253947_3273049	0/0	t0003	414	1	0	0	0	0	1	copy fasta	PSMG4	chr6	3253947	3273049
PSORS1C1_chr6_31109800_31145092	0/1	t0001	481	107	35	6	51	2	12	copy fasta	PSORS1C1	chr6	31109800	31145092
PSORS1C1_chr6_31109800_31145092	0/0	t0002	481	98	20	18	49	4	7	copy fasta	PSORS1C1	chr6	31109800	31145092
PSORS1C1_chr6_31109800_31145092	0/0	t0003	481	76	6	19	46	2	3	copy fasta	PSORS1C1	chr6	31109800	31145092
PSORS1C1_chr6_31109800_31145092	0/0	t0004	480	42	3	3	28	0	8	copy fasta	PSORS1C1	chr6	31109800	31145092
PSORS1C1_chr6_31109800_31145092	0/0	t0005	481	30	5	4	18	3	0	copy fasta	PSORS1C1	chr6	31109800	31145092
PSORS1C1_chr6_31109800_31145092	0/0	t0006	481	25	11	6	6	2	0	copy fasta	PSORS1C1	chr6	31109800	31145092
PSORS1C1_chr6_31109800_31145092	0/0	t0007	481	15	1	5	4	0	5	copy fasta	PSORS1C1	chr6	31109800	31145092
PSORS1C1_chr6_31109800_31145092	0/0	t0008	481	15	0	8	2	1	4	copy fasta	PSORS1C1	chr6	31109800	31145092
PSORS1C1_chr6_31109800_31145092	0/0	t0009	480	9	4	3	0	0	2	copy fasta	PSORS1C1	chr6	31109800	31145092
PSORS1C1_chr6_31109800_31145092	0/0	t0010	481	6	0	0	0	1	5	copy fasta	PSORS1C1	chr6	31109800	31145092
PSORS1C1_chr6_31109800_31145092	0/0	t0011	480	5	3	2	0	0	0	copy fasta	PSORS1C1	chr6	31109800	31145092
PSORS1C1_chr6_31109800_31145092	0/0	t0012	480	5	0	4	0	1	0	copy fasta	PSORS1C1	chr6	31109800	31145092
PSORS1C1_chr6_31109800_31145092	0/0	t0013	481	3	0	0	3	0	0	copy fasta	PSORS1C1	chr6	31109800	31145092
PSORS1C1_chr6_31109800_31145092	0/0	t0014	481	2	2	0	0	0	0	copy fasta	PSORS1C1	chr6	31109800	31145092
PSORS1C1_chr6_31109800_31145092	0/0	t0015	481	2	0	0	2	0	0	copy fasta	PSORS1C1	chr6	31109800	31145092
PSORS1C1_chr6_31109800_31145092	0/0	t0016	480	2	2	0	0	0	0	copy fasta	PSORS1C1	chr6	31109800	31145092
PSORS1C1_chr6_31109800_31145092	0/0	t0017	481	2	1	1	0	0	0	copy fasta	PSORS1C1	chr6	31109800	31145092
PSORS1C1_chr6_31109800_31145092	0/0	t0018	481	2	0	1	0	0	1	copy fasta	PSORS1C1	chr6	31109800	31145092
PSORS1C1_chr6_31109800_31145092	0/0	t0019	460	1	0	0	0	0	1	copy fasta	PSORS1C1	chr6	31109800	31145092
PSORS1C1_chr6_31109800_31145092	0/0	t0020	481	1	0	0	1	0	0	copy fasta	PSORS1C1	chr6	31109800	31145092
PSORS1C1_chr6_31109800_31145092	0/0	t0021	481	1	1	0	0	0	0	copy fasta	PSORS1C1	chr6	31109800	31145092
PSORS1C2_chr6_31132534_31144066	0/0	t0001	458	206	46	37	103	8	12	copy fasta	PSORS1C2	chr6	31132534	31144066
PSORS1C2_chr6_31132534_31144066	0/0	t0002	458	99	21	24	34	4	16	copy fasta	PSORS1C2	chr6	31132534	31144066
PSORS1C2_chr6_31132534_31144066	0/1	t0003	458	51	14	3	24	2	7	copy fasta	PSORS1C2	chr6	31132534	31144066
PSORS1C2_chr6_31132534_31144066	0/0	t0004	458	44	5	0	35	1	3	copy fasta	PSORS1C2	chr6	31132534	31144066
PSORS1C2_chr6_31132534_31144066	0/0	t0005	458	22	0	11	3	1	7	copy fasta	PSORS1C2	chr6	31132534	31144066
PSORS1C2_chr6_31132534_31144066	0/0	t0006	457	14	2	7	2	1	2	copy fasta	PSORS1C2	chr6	31132534	31144066
PSORS1C2_chr6_31132534_31144066	0/0	t0007	458	12	1	0	11	0	0	copy fasta	PSORS1C2	chr6	31132534	31144066
PSORS1C2_chr6_31132534_31144066	0/0	t0008	458	5	2	0	1	1	1	copy fasta	PSORS1C2	chr6	31132534	31144066
PSORS1C2_chr6_31132534_31144066	0/0	t0009	458	3	3	0	0	0	0	copy fasta	PSORS1C2	chr6	31132534	31144066
PSORS1C2_chr6_31132534_31144066	0/0	t0010	458	2	0	0	2	0	0	copy fasta	PSORS1C2	chr6	31132534	31144066
PSORS1C2_chr6_31132534_31144066	0/0	t0011	457	1	1	0	0	0	0	copy fasta	PSORS1C2	chr6	31132534	31144066
PSORS1C2_chr6_31132534_31144066	0/0	t0012	457	1	1	0	0	0	0	copy fasta	PSORS1C2	chr6	31132534	31144066
PSORS1C2_chr6_31132534_31144066	0/0	t0013	458	1	0	0	1	0	0	copy fasta	PSORS1C2	chr6	31132534	31144066
PSPC1_chr13_19697500_19787945	0/0	t0001	863	134	22	42	44	8	18	copy fasta	PSPC1	chr13	19697500	19787945
PSPC1_chr13_19697500_19787945	1/1	t0002	864	72	46	12	3	3	6	copy fasta	PSPC1	chr13	19697500	19787945
PSPC1_chr13_19697500_19787945	0/0	t0003	864	30	10	4	11	2	3	copy fasta	PSPC1	chr13	19697500	19787945
PSPC1_chr13_19697500_19787945	0/0	t0004	865	7	7	0	0	0	0	copy fasta	PSPC1	chr13	19697500	19787945
PSPC1_chr13_19697500_19787945	0/0	t0005	865	4	3	1	0	0	0	copy fasta	PSPC1	chr13	19697500	19787945
PSPC1_chr13_19697500_19787945	0/0	t0006	865	3	0	3	0	0	0	copy fasta	PSPC1	chr13	19697500	19787945
PSPC1_chr13_19697500_19787945	0/0	t0007	864	2	1	0	0	1	0	copy fasta	PSPC1	chr13	19697500	19787945
PSPC1_chr13_19697500_19787945	0/0	t0008	863	1	0	0	1	0	0	copy fasta	PSPC1	chr13	19697500	19787945
PSPC1_chr13_19697500_19787945	0/0	t0009	864	1	1	0	0	0	0	copy fasta	PSPC1	chr13	19697500	19787945
PSPC1_chr13_19697500_19787945	0/0	t0010	865	1	0	0	1	0	0	copy fasta	PSPC1	chr13	19697500	19787945
PSPC1_chr13_19697500_19787945	0/0	t0011	863	1	0	0	0	0	1	copy fasta	PSPC1	chr13	19697500	19787945
PSPC1_chr13_19697500_19787945	0/0	t0012	865	1	1	0	0	0	0	copy fasta	PSPC1	chr13	19697500	19787945
PSPC1_chr13_19697500_19787945	0/0	t0013	863	1	1	0	0	0	0	copy fasta	PSPC1	chr13	19697500	19787945