JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PSPH_chr7_56006064_56056444	1/0	t0001	1297	114	29	22	51	3	8	copy fasta	PSPH	chr7	56006064	56056444
PSPH_chr7_56006064_56056444	0/0	t0002	1298	98	8	23	51	7	9	copy fasta	PSPH	chr7	56006064	56056444
PSPH_chr7_56006064_56056444	0/1	t0003	1296	90	19	11	49	0	10	copy fasta	PSPH	chr7	56006064	56056444
PSPH_chr7_56006064_56056444	0/0	t0004	1297	51	26	12	1	5	7	copy fasta	PSPH	chr7	56006064	56056444
PSPH_chr7_56006064_56056444	0/0	t0005	1295	19	1	3	15	0	0	copy fasta	PSPH	chr7	56006064	56056444
PSPH_chr7_56006064_56056444	0/0	t0006	1295	5	4	0	1	0	0	copy fasta	PSPH	chr7	56006064	56056444
PSPH_chr7_56006064_56056444	0/0	t0007	1296	3	3	0	0	0	0	copy fasta	PSPH	chr7	56006064	56056444
PSPH_chr7_56006064_56056444	0/0	t0008	1296	2	0	0	2	0	0	copy fasta	PSPH	chr7	56006064	56056444
PSPH_chr7_56006064_56056444	0/0	t0009	1296	2	0	0	2	0	0	copy fasta	PSPH	chr7	56006064	56056444
PSPH_chr7_56006064_56056444	0/0	t0010	1330	2	2	0	0	0	0	copy fasta	PSPH	chr7	56006064	56056444
PSPH_chr7_56006064_56056444	0/0	t0011	1297	1	0	1	0	0	0	copy fasta	PSPH	chr7	56006064	56056444
PSPH_chr7_56006064_56056444	0/0	t0012	1298	1	0	0	0	1	0	copy fasta	PSPH	chr7	56006064	56056444
PSPH_chr7_56006064_56056444	0/0	t0013	1297	1	0	0	1	0	0	copy fasta	PSPH	chr7	56006064	56056444
PSPH_chr7_56006064_56056444	0/0	t0014	1297	1	0	0	1	0	0	copy fasta	PSPH	chr7	56006064	56056444
PSPH_chr7_56006064_56056444	0/0	t0015	1331	1	1	0	0	0	0	copy fasta	PSPH	chr7	56006064	56056444
PSPH_chr7_56006064_56056444	0/0	t0016	1297	1	1	0	0	0	0	copy fasta	PSPH	chr7	56006064	56056444
PSPN_chr19_6370148_6380933	1/1	t0001	231	370	83	69	168	14	34	copy fasta	PSPN	chr19	6370148	6380933
PSPN_chr19_6370148_6380933	0/0	t0002	231	9	6	3	0	0	0	copy fasta	PSPN	chr19	6370148	6380933
PSPN_chr19_6370148_6380933	0/0	t0003	231	1	1	0	0	0	0	copy fasta	PSPN	chr19	6370148	6380933
PSRC1_chr1_109274556_109288145	1/1	t0001	719	403	84	70	189	12	46	copy fasta	PSRC1	chr1	109274556	109288145
PSRC1_chr1_109274556_109288145	0/0	t0002	719	17	3	8	0	4	2	copy fasta	PSRC1	chr1	109274556	109288145
PSRC1_chr1_109274556_109288145	0/0	t0003	718	9	6	1	0	2	0	copy fasta	PSRC1	chr1	109274556	109288145
PSRC1_chr1_109274556_109288145	0/0	t0004	719	4	3	1	0	0	0	copy fasta	PSRC1	chr1	109274556	109288145
PSRC1_chr1_109274556_109288145	0/0	t0005	719	2	2	0	0	0	0	copy fasta	PSRC1	chr1	109274556	109288145
PSRC1_chr1_109274556_109288145	0/0	t0006	719	1	1	0	0	0	0	copy fasta	PSRC1	chr1	109274556	109288145
PSRC1_chr1_109274556_109288145	0/0	t0007	719	1	0	0	1	0	0	copy fasta	PSRC1	chr1	109274556	109288145
PSRC1_chr1_109274556_109288145	0/0	t0008	719	1	1	0	0	0	0	copy fasta	PSRC1	chr1	109274556	109288145
PSTK_chr10_122975401_122995390	1/1	t0001	97	411	94	71	185	14	45	copy fasta	PSTK	chr10	122975401	122995390
PSTK_chr10_122975401_122995390	0/0	t0002	97	4	2	1	0	0	1	copy fasta	PSTK	chr10	122975401	122995390
PSTK_chr10_122975401_122995390	0/0	t0003	97	1	0	0	1	0	0	copy fasta	PSTK	chr10	122975401	122995390
PSTPIP2_chr18_45978536_46077260	0/1	t0001	1996	133	25	26	64	4	13	copy fasta	PSTPIP2	chr18	45978536	46077260
PSTPIP2_chr18_45978536_46077260	0/0	t0002	1996	97	35	10	49	0	3	copy fasta	PSTPIP2	chr18	45978536	46077260
PSTPIP2_chr18_45978536_46077260	0/0	t0003	1996	39	4	15	6	3	11	copy fasta	PSTPIP2	chr18	45978536	46077260
PSTPIP2_chr18_45978536_46077260	0/0	t0004	1996	8	4	0	2	1	1	copy fasta	PSTPIP2	chr18	45978536	46077260
PSTPIP2_chr18_45978536_46077260	0/0	t0005	1996	6	5	1	0	0	0	copy fasta	PSTPIP2	chr18	45978536	46077260
PSTPIP2_chr18_45978536_46077260	0/0	t0006	1996	6	1	0	1	2	2	copy fasta	PSTPIP2	chr18	45978536	46077260
PSTPIP2_chr18_45978536_46077260	0/0	t0007	1996	5	0	0	5	0	0	copy fasta	PSTPIP2	chr18	45978536	46077260
PSTPIP2_chr18_45978536_46077260	0/0	t0008	1996	5	5	0	0	0	0	copy fasta	PSTPIP2	chr18	45978536	46077260
PSTPIP2_chr18_45978536_46077260	0/0	t0009	1996	3	3	0	0	0	0	copy fasta	PSTPIP2	chr18	45978536	46077260
PSTPIP2_chr18_45978536_46077260	0/0	t0010	1996	2	1	1	0	0	0	copy fasta	PSTPIP2	chr18	45978536	46077260
PSTPIP2_chr18_45978536_46077260	0/0	t0011	1996	2	1	1	0	0	0	copy fasta	PSTPIP2	chr18	45978536	46077260
PSTPIP2_chr18_45978536_46077260	0/0	t0012	1996	1	1	0	0	0	0	copy fasta	PSTPIP2	chr18	45978536	46077260
PSTPIP2_chr18_45978536_46077260	0/0	t0013	1996	1	0	0	1	0	0	copy fasta	PSTPIP2	chr18	45978536	46077260
PSTPIP2_chr18_45978536_46077260	0/0	t0014	1996	1	1	0	0	0	0	copy fasta	PSTPIP2	chr18	45978536	46077260
PSTPIP2_chr18_45978536_46077260	1/0	t0015	1996	1	0	0	0	0	0	copy fasta	PSTPIP2	chr18	45978536	46077260
PSTPIP2_chr18_45978536_46077260	0/0	t0016	1996	1	0	0	0	0	1	copy fasta	PSTPIP2	chr18	45978536	46077260
PSTPIP2_chr18_45978536_46077260	0/0	t0017	1996	1	1	0	0	0	0	copy fasta	PSTPIP2	chr18	45978536	46077260
PSTPIP2_chr18_45978536_46077260	0/0	t0018	1982	1	0	0	0	0	1	copy fasta	PSTPIP2	chr18	45978536	46077260
PSTPIP2_chr18_45978536_46077260	0/0	t0019	1996	1	1	0	0	0	0	copy fasta	PSTPIP2	chr18	45978536	46077260
PSTPIP2_chr18_45978536_46077260	0/0	t0020	1996	1	1	0	0	0	0	copy fasta	PSTPIP2	chr18	45978536	46077260