JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PSTPIP2_chr18_45978536_46077260	0/0	t0021	1996	1	1	0	0	0	0	copy fasta	PSTPIP2	chr18	45978536	46077260
PTAFR_chr1_28142166_28181690	1/1	t0001	2965	112	20	26	37	10	17	copy fasta	PTAFR	chr1	28142166	28181690
PTAFR_chr1_28142166_28181690	0/0	t0002	2963	53	8	6	30	3	6	copy fasta	PTAFR	chr1	28142166	28181690
PTAFR_chr1_28142166_28181690	0/0	t0003	2966	37	17	9	5	1	5	copy fasta	PTAFR	chr1	28142166	28181690
PTAFR_chr1_28142166_28181690	0/0	t0004	2964	28	3	1	18	1	5	copy fasta	PTAFR	chr1	28142166	28181690
PTAFR_chr1_28142166_28181690	0/0	t0005	2964	20	9	1	9	0	1	copy fasta	PTAFR	chr1	28142166	28181690
PTAFR_chr1_28142166_28181690	0/0	t0006	2962	16	12	0	4	0	0	copy fasta	PTAFR	chr1	28142166	28181690
PTAFR_chr1_28142166_28181690	0/0	t0007	2963	9	7	2	0	0	0	copy fasta	PTAFR	chr1	28142166	28181690
PTAFR_chr1_28142166_28181690	0/0	t0008	2965	5	3	0	0	0	2	copy fasta	PTAFR	chr1	28142166	28181690
PTAFR_chr1_28142166_28181690	0/0	t0009	2966	3	3	0	0	0	0	copy fasta	PTAFR	chr1	28142166	28181690
PTAFR_chr1_28142166_28181690	0/0	t0010	2965	3	2	0	0	0	1	copy fasta	PTAFR	chr1	28142166	28181690
PTAFR_chr1_28142166_28181690	0/0	t0011	2965	2	0	0	0	0	2	copy fasta	PTAFR	chr1	28142166	28181690
PTAFR_chr1_28142166_28181690	0/0	t0012	2965	2	0	0	2	0	0	copy fasta	PTAFR	chr1	28142166	28181690
PTAFR_chr1_28142166_28181690	0/0	t0013	2963	2	0	0	1	0	1	copy fasta	PTAFR	chr1	28142166	28181690
PTAFR_chr1_28142166_28181690	0/0	t0014	2965	1	0	0	0	1	0	copy fasta	PTAFR	chr1	28142166	28181690
PTAFR_chr1_28142166_28181690	0/0	t0015	2946	1	0	0	1	0	0	copy fasta	PTAFR	chr1	28142166	28181690
PTAFR_chr1_28142166_28181690	0/0	t0016	2965	1	1	0	0	0	0	copy fasta	PTAFR	chr1	28142166	28181690
PTAFR_chr1_28142166_28181690	0/0	t0017	2965	1	1	0	0	0	0	copy fasta	PTAFR	chr1	28142166	28181690
PTAFR_chr1_28142166_28181690	0/0	t0018	2965	1	0	0	1	0	0	copy fasta	PTAFR	chr1	28142166	28181690
PTAFR_chr1_28142166_28181690	0/0	t0019	2965	1	0	1	0	0	0	copy fasta	PTAFR	chr1	28142166	28181690
PTAFR_chr1_28142166_28181690	0/0	t0020	2963	1	0	0	1	0	0	copy fasta	PTAFR	chr1	28142166	28181690
PTAFR_chr1_28142166_28181690	0/0	t0021	2964	1	0	0	1	0	0	copy fasta	PTAFR	chr1	28142166	28181690
PTAFR_chr1_28142166_28181690	0/0	t0022	2963	1	1	0	0	0	0	copy fasta	PTAFR	chr1	28142166	28181690
PTAFR_chr1_28142166_28181690	0/0	t0023	2962	1	1	0	0	0	0	copy fasta	PTAFR	chr1	28142166	28181690
PTAFR_chr1_28142166_28181690	0/0	t0024	2963	1	1	0	0	0	0	copy fasta	PTAFR	chr1	28142166	28181690
PTAFR_chr1_28142166_28181690	0/0	t0025	2964	1	1	0	0	0	0	copy fasta	PTAFR	chr1	28142166	28181690
PTAFR_chr1_28142166_28181690	0/0	t0026	2964	1	1	0	0	0	0	copy fasta	PTAFR	chr1	28142166	28181690
PTAFR_chr1_28142166_28181690	0/0	t0027	2962	1	1	0	0	0	0	copy fasta	PTAFR	chr1	28142166	28181690
PTAR1_chr9_69704525_69765011	0/0	t0001	8892	80	6	13	46	3	12	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0002	8892	58	10	8	30	2	8	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/1	t0003	8888	52	3	12	20	2	14	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0004	8891	48	6	3	34	0	5	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	1/0	t0005	8891	31	4	1	20	2	3	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0006	8889	15	15	0	0	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0007	8891	11	0	0	11	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0008	8892	10	4	3	0	1	2	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0009	8892	7	3	0	4	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0010	8888	6	6	0	0	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0011	8891	6	6	0	0	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0012	8892	4	0	0	4	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0013	8892	4	4	0	0	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0014	8892	3	3	0	0	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0015	8892	3	0	0	3	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0016	8892	2	0	0	1	0	1	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0017	8892	2	0	2	0	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0018	8891	2	0	0	0	0	2	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0019	8892	2	2	0	0	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0020	8892	2	2	0	0	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0021	8888	2	0	2	0	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0022	8892	1	1	0	0	0	0	copy fasta	PTAR1	chr9	69704525	69765011