JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTAR1_chr9_69704525_69765011	0/0	t0023	8892	1	1	0	0	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0024	8892	1	0	0	0	0	1	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0025	8892	1	0	1	0	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0026	8892	1	0	0	1	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0027	8892	1	1	0	0	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0028	8892	1	0	1	0	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0029	8892	1	0	0	1	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0030	8892	1	0	0	1	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0031	8888	1	0	1	0	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0032	8892	1	1	0	0	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0033	8891	1	0	0	1	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0034	8891	1	0	0	1	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0035	8892	1	0	0	1	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0036	8891	1	0	0	1	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0037	8888	1	0	0	1	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0038	8888	1	0	1	0	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0039	8888	1	0	1	0	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0040	8892	1	1	0	0	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0041	8888	1	0	1	0	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0042	8888	1	0	1	0	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0043	8888	1	0	1	0	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0044	8888	1	0	0	1	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0045	8892	1	0	0	1	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0046	8891	1	1	0	0	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0047	8891	1	0	0	1	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0048	8892	1	0	1	0	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0049	8892	1	0	1	0	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0050	8892	1	0	0	1	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0051	8892	1	1	0	0	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0052	8892	1	1	0	0	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0053	8892	1	1	0	0	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0054	8892	1	1	0	0	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0055	8892	1	1	0	0	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0056	8888	1	1	0	0	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0057	8891	1	1	0	0	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0058	8892	1	1	0	0	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	t0059	8912	1	0	0	1	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTBP1_chr19_792452_817312	1/0	t0001	1533	158	22	38	65	11	21	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	t0002	1527	85	19	22	25	3	16	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	t0003	1527	36	0	4	28	0	4	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	t0004	1533	29	28	1	0	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/1	t0005	1530	28	0	5	16	4	2	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	t0006	1533	6	2	0	2	0	2	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	t0007	1534	5	0	4	1	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	t0008	1533	3	2	1	0	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	t0009	1530	2	2	0	0	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	t0010	1527	2	1	1	0	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	t0011	1504	2	2	0	0	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	t0012	1533	1	1	0	0	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	t0013	1527	1	1	0	0	0	0	copy fasta	PTBP1	chr19	792452	817312