JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTBP1_chr19_792452_817312	0/0	t0014	1533	1	1	0	0	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	t0015	1530	1	0	0	1	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	t0016	1533	1	1	0	0	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	t0017	1533	1	0	1	0	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	t0018	1534	1	1	0	0	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	t0019	1527	1	1	0	0	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	t0020	1530	1	0	0	1	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	t0021	1528	1	0	0	1	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	t0022	1527	1	0	0	1	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	t0023	1533	1	1	0	0	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	t0024	1533	1	1	0	0	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	t0025	1527	1	0	1	0	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	t0026	1534	1	1	0	0	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	t0027	1533	1	1	0	0	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	t0028	1533	1	0	1	0	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	t0029	1533	1	0	0	0	0	1	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	t0030	1530	1	0	0	1	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	t0031	1528	1	0	0	1	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	t0032	1524	1	0	1	0	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	t0033	1527	1	0	1	0	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	t0034	1527	1	0	0	1	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	t0035	1533	1	1	0	0	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	t0036	1533	1	0	0	1	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	t0037	1533	1	1	0	0	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	t0038	1530	1	0	0	0	0	1	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	t0039	1534	1	0	0	0	0	1	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	t0040	1533	1	1	0	0	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	t0041	1527	1	0	0	1	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	t0042	1533	1	1	0	0	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	t0043	1533	1	0	1	0	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP2_chr1_96716784_96820049	0/1	t0001	1726	97	39	9	39	6	3	copy fasta	PTBP2	chr1	96716784	96820049
PTBP2_chr1_96716784_96820049	0/0	t0002	1721	89	2	17	58	3	9	copy fasta	PTBP2	chr1	96716784	96820049
PTBP2_chr1_96716784_96820049	0/0	t0003	1727	88	16	19	38	4	11	copy fasta	PTBP2	chr1	96716784	96820049
PTBP2_chr1_96716784_96820049	0/0	t0004	1728	30	3	10	16	0	1	copy fasta	PTBP2	chr1	96716784	96820049
PTBP2_chr1_96716784_96820049	0/0	t0005	1727	14	13	0	0	0	1	copy fasta	PTBP2	chr1	96716784	96820049
PTBP2_chr1_96716784_96820049	1/0	t0006	1726	12	0	3	3	0	5	copy fasta	PTBP2	chr1	96716784	96820049
PTBP2_chr1_96716784_96820049	0/0	t0007	1728	10	8	2	0	0	0	copy fasta	PTBP2	chr1	96716784	96820049
PTBP2_chr1_96716784_96820049	0/0	t0008	1727	9	3	2	3	1	0	copy fasta	PTBP2	chr1	96716784	96820049
PTBP2_chr1_96716784_96820049	0/0	t0009	1721	3	1	0	2	0	0	copy fasta	PTBP2	chr1	96716784	96820049
PTBP2_chr1_96716784_96820049	0/0	t0010	1721	3	0	1	0	0	2	copy fasta	PTBP2	chr1	96716784	96820049
PTBP2_chr1_96716784_96820049	0/0	t0011	1721	1	0	0	1	0	0	copy fasta	PTBP2	chr1	96716784	96820049
PTBP2_chr1_96716784_96820049	0/0	t0012	1728	1	0	0	0	0	1	copy fasta	PTBP2	chr1	96716784	96820049
PTBP2_chr1_96716784_96820049	0/0	t0013	1721	1	0	1	0	0	0	copy fasta	PTBP2	chr1	96716784	96820049
PTBP2_chr1_96716784_96820049	0/0	t0014	1721	1	0	0	0	0	1	copy fasta	PTBP2	chr1	96716784	96820049
PTBP2_chr1_96716784_96820049	0/0	t0015	1726	1	0	0	0	0	1	copy fasta	PTBP2	chr1	96716784	96820049
PTBP2_chr1_96716784_96820049	0/0	t0016	1742	1	0	0	0	0	1	copy fasta	PTBP2	chr1	96716784	96820049
PTBP2_chr1_96716784_96820049	0/0	t0017	1721	1	0	0	1	0	0	copy fasta	PTBP2	chr1	96716784	96820049
PTBP2_chr1_96716784_96820049	0/0	t0018	1721	1	0	0	1	0	0	copy fasta	PTBP2	chr1	96716784	96820049
PTBP2_chr1_96716784_96820049	0/0	t0019	1727	1	1	0	0	0	0	copy fasta	PTBP2	chr1	96716784	96820049
PTBP3_chr9_112213435_112338619	0/0	t0001	5622	95	27	18	34	5	11	copy fasta	PTBP3	chr9	112213435	112338619