JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTBP3_chr9_112213435_112338619	0/1	t0002	5622	86	3	21	46	2	13	copy fasta	PTBP3	chr9	112213435	112338619
PTBP3_chr9_112213435_112338619	0/0	t0003	5623	37	7	4	22	0	4	copy fasta	PTBP3	chr9	112213435	112338619
PTBP3_chr9_112213435_112338619	1/0	t0004	5618	31	2	10	11	4	3	copy fasta	PTBP3	chr9	112213435	112338619
PTBP3_chr9_112213435_112338619	0/0	t0005	5622	26	0	0	26	0	0	copy fasta	PTBP3	chr9	112213435	112338619
PTBP3_chr9_112213435_112338619	0/0	t0006	5622	6	0	3	0	3	0	copy fasta	PTBP3	chr9	112213435	112338619
PTBP3_chr9_112213435_112338619	0/0	t0007	5622	5	5	0	0	0	0	copy fasta	PTBP3	chr9	112213435	112338619
PTBP3_chr9_112213435_112338619	0/0	t0008	5622	5	5	0	0	0	0	copy fasta	PTBP3	chr9	112213435	112338619
PTBP3_chr9_112213435_112338619	0/0	t0009	5622	4	4	0	0	0	0	copy fasta	PTBP3	chr9	112213435	112338619
PTBP3_chr9_112213435_112338619	0/0	t0010	5622	4	3	1	0	0	0	copy fasta	PTBP3	chr9	112213435	112338619
PTBP3_chr9_112213435_112338619	0/0	t0011	5622	4	0	0	4	0	0	copy fasta	PTBP3	chr9	112213435	112338619
PTBP3_chr9_112213435_112338619	0/0	t0012	5622	4	4	0	0	0	0	copy fasta	PTBP3	chr9	112213435	112338619
PTBP3_chr9_112213435_112338619	0/0	t0013	5623	3	3	0	0	0	0	copy fasta	PTBP3	chr9	112213435	112338619
PTBP3_chr9_112213435_112338619	0/0	t0014	5620	3	2	1	0	0	0	copy fasta	PTBP3	chr9	112213435	112338619
PTBP3_chr9_112213435_112338619	0/0	t0015	5622	2	0	0	2	0	0	copy fasta	PTBP3	chr9	112213435	112338619
PTBP3_chr9_112213435_112338619	0/0	t0016	5623	2	0	0	1	0	1	copy fasta	PTBP3	chr9	112213435	112338619
PTBP3_chr9_112213435_112338619	0/0	t0017	5623	2	0	0	2	0	0	copy fasta	PTBP3	chr9	112213435	112338619
PTBP3_chr9_112213435_112338619	0/0	t0018	5626	2	0	2	0	0	0	copy fasta	PTBP3	chr9	112213435	112338619
PTBP3_chr9_112213435_112338619	0/0	t0019	5623	2	0	0	2	0	0	copy fasta	PTBP3	chr9	112213435	112338619
PTBP3_chr9_112213435_112338619	0/0	t0020	5620	2	2	0	0	0	0	copy fasta	PTBP3	chr9	112213435	112338619
PTBP3_chr9_112213435_112338619	0/0	t0021	5618	1	0	0	1	0	0	copy fasta	PTBP3	chr9	112213435	112338619
PTBP3_chr9_112213435_112338619	0/0	t0022	5622	1	1	0	0	0	0	copy fasta	PTBP3	chr9	112213435	112338619
PTBP3_chr9_112213435_112338619	0/0	t0023	5622	1	0	0	1	0	0	copy fasta	PTBP3	chr9	112213435	112338619
PTBP3_chr9_112213435_112338619	0/0	t0024	5622	1	1	0	0	0	0	copy fasta	PTBP3	chr9	112213435	112338619
PTBP3_chr9_112213435_112338619	0/0	t0025	5622	1	1	0	0	0	0	copy fasta	PTBP3	chr9	112213435	112338619
PTBP3_chr9_112213435_112338619	0/0	t0026	5622	1	0	1	0	0	0	copy fasta	PTBP3	chr9	112213435	112338619
PTBP3_chr9_112213435_112338619	0/0	t0027	5622	1	0	0	0	0	1	copy fasta	PTBP3	chr9	112213435	112338619
PTBP3_chr9_112213435_112338619	0/0	t0028	5622	1	1	0	0	0	0	copy fasta	PTBP3	chr9	112213435	112338619
PTBP3_chr9_112213435_112338619	0/0	t0029	5622	1	1	0	0	0	0	copy fasta	PTBP3	chr9	112213435	112338619
PTBP3_chr9_112213435_112338619	0/0	t0030	5622	1	0	0	1	0	0	copy fasta	PTBP3	chr9	112213435	112338619
PTBP3_chr9_112213435_112338619	0/0	t0031	5623	1	0	0	1	0	0	copy fasta	PTBP3	chr9	112213435	112338619
PTBP3_chr9_112213435_112338619	0/0	t0032	5623	1	1	0	0	0	0	copy fasta	PTBP3	chr9	112213435	112338619
PTBP3_chr9_112213435_112338619	0/0	t0033	5622	1	0	0	1	0	0	copy fasta	PTBP3	chr9	112213435	112338619
PTBP3_chr9_112213435_112338619	0/0	t0034	5622	1	0	1	0	0	0	copy fasta	PTBP3	chr9	112213435	112338619
PTBP3_chr9_112213435_112338619	0/0	t0035	5626	1	0	0	1	0	0	copy fasta	PTBP3	chr9	112213435	112338619
PTBP3_chr9_112213435_112338619	0/0	t0036	5627	1	0	0	0	0	1	copy fasta	PTBP3	chr9	112213435	112338619
PTBP3_chr9_112213435_112338619	0/0	t0037	5620	1	1	0	0	0	0	copy fasta	PTBP3	chr9	112213435	112338619
PTCD1_chr7_99411739_99443798	1/1	t0001	3362	170	5	44	92	10	17	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	t0002	3362	76	6	4	52	0	14	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	t0003	3362	26	21	1	0	2	2	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	t0004	3362	17	13	4	0	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	t0005	3362	17	11	1	5	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	t0006	3362	8	8	0	0	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	t0007	3362	6	6	0	0	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	t0008	3362	6	5	1	0	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	t0009	3361	5	0	0	5	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	t0010	3362	4	0	3	1	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	t0011	3362	4	3	0	0	1	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	t0012	3362	4	3	0	1	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	t0013	3362	3	0	1	0	1	1	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	t0014	3362	3	3	0	0	0	0	copy fasta	PTCD1	chr7	99411739	99443798