JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTCD1_chr7_99411739_99443798	0/0	t0015	3362	3	0	0	1	0	2	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	t0016	3362	2	2	0	0	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	t0017	3362	2	0	0	2	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	t0018	3361	1	0	0	1	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	t0019	3362	1	1	0	0	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	t0020	3362	1	0	1	0	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	t0021	3362	1	0	0	1	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	t0022	3362	1	1	0	0	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	t0023	3362	1	0	0	1	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	t0024	3362	1	1	0	0	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	t0025	3362	1	0	0	1	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	t0026	3361	1	0	0	1	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	t0027	3362	1	0	0	1	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	t0028	3362	1	1	0	0	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	t0029	3362	1	0	0	1	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	t0030	3362	1	0	0	1	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	t0031	3362	1	0	0	0	1	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	t0032	3362	1	0	0	1	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	t0033	3362	1	0	0	0	1	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	t0034	3362	1	1	0	0	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	t0035	3362	1	1	0	0	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	t0036	3362	1	1	0	0	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	t0037	3362	1	0	0	1	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	t0038	3362	1	1	0	0	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	t0039	3362	1	1	0	0	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	t0040	3362	1	1	0	0	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	t0041	3362	1	0	0	1	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD2_chr5_72315373_72373395	1/0	t0001	9979	90	3	20	53	3	10	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0002	9979	51	0	6	41	0	4	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0003	9979	20	2	2	12	0	4	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0004	9979	16	2	5	4	2	3	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0005	9979	12	7	1	1	2	1	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0006	9979	10	0	5	0	2	3	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0007	9971	8	8	0	0	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0008	9979	8	1	3	0	1	3	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0009	9979	8	7	1	0	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0010	9979	6	6	0	0	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0011	9979	6	5	1	0	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0012	9979	5	0	0	5	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0013	9979	4	2	2	0	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0014	9979	4	1	2	0	1	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0015	9979	4	4	0	0	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0016	9979	3	0	2	0	1	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0017	9979	3	2	1	0	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0018	9979	3	3	0	0	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0019	9979	3	3	0	0	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0020	9979	3	2	0	0	1	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0021	9978	3	3	0	0	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0022	9979	2	0	0	0	0	2	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0023	9979	2	2	0	0	0	0	copy fasta	PTCD2	chr5	72315373	72373395