Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATP8A2_chr13_25366974_26030851	0/0	t0066	6106	1	1	0	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	1/0	t0067	6106	1	0	0	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0068	6106	1	0	1	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0069	6105	1	1	0	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0070	6105	1	1	0	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0071	6105	1	1	0	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0072	6108	1	1	0	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0073	6108	1	1	0	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8A2_chr13_25366974_26030851	0/0	t0074	6108	1	1	0	0	0	0	copy fasta	ATP8A2	chr13	25366974	26030851
ATP8B1_chr18_57641426_57808315	0/0	t0001	2406	44	14	14	6	2	8	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0002	2406	26	8	4	13	0	1	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0003	2406	25	7	3	12	0	3	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	1/0	t0004	2406	23	8	6	1	1	6	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0005	2406	22	1	3	13	3	2	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0006	2406	18	0	10	1	4	3	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0007	2405	18	6	2	10	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0008	2405	17	7	0	7	2	1	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0009	2406	15	0	2	13	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0010	2406	14	3	4	4	1	2	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/1	t0011	2406	11	2	4	3	0	1	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0012	2406	7	1	1	4	1	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0013	2406	7	1	4	1	0	1	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0014	2406	6	0	0	6	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0015	2406	5	1	2	0	1	1	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0016	2406	4	0	1	3	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0017	2406	4	1	0	3	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0018	2405	4	1	2	0	0	1	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0019	2406	3	0	0	3	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0020	2405	3	3	0	0	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0021	2406	2	2	0	0	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0022	2405	2	0	0	0	0	2	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0023	2406	2	0	0	2	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0024	2405	2	0	1	1	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0025	2406	2	0	0	1	0	1	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0026	2406	2	1	0	0	0	1	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0027	2406	2	0	1	0	1	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0028	2405	2	2	0	0	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0029	2406	1	0	1	0	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0030	2406	1	0	0	1	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0031	2406	1	0	0	0	0	1	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0032	2406	1	1	0	0	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0033	2406	1	1	0	0	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0034	2406	1	1	0	0	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0035	2406	1	1	0	0	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0036	2406	1	0	0	1	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0037	2406	1	0	0	1	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0038	2406	1	0	1	0	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0039	2406	1	1	0	0	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0040	2406	1	1	0	0	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0041	2406	1	1	0	0	0	0	copy fasta	ATP8B1	chr18	57641426	57808315