JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTCD2_chr5_72315373_72373395	0/0	t0024	9979	2	2	0	0	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0025	9979	2	2	0	0	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0026	9979	2	0	2	0	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/1	t0027	9979	2	0	0	0	1	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0028	9979	2	0	0	0	0	2	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0029	9979	2	0	0	2	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0030	9979	2	0	0	2	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0031	9979	2	0	0	1	0	1	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0032	9978	2	2	0	0	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0033	9979	2	0	2	0	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0034	9979	1	0	0	1	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0035	9970	1	1	0	0	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0036	9971	1	1	0	0	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0037	9970	1	1	0	0	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0038	9979	1	1	0	0	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0039	9979	1	0	0	1	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0040	9979	1	0	0	1	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0041	9979	1	0	0	1	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0042	9979	1	0	0	0	0	1	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0043	9979	1	0	1	0	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0044	9979	1	0	0	0	0	1	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0045	9979	1	1	0	0	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0046	9979	1	0	0	1	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0047	9979	1	1	0	0	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0048	9979	1	1	0	0	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0049	9979	1	1	0	0	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0050	9979	1	0	0	0	0	1	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0051	9979	1	1	0	0	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0052	9979	1	0	0	1	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0053	9979	1	0	1	0	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0054	9979	1	0	0	0	0	1	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0055	9979	1	0	1	0	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0056	9979	1	0	0	1	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0057	9979	1	0	0	1	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0058	9979	1	0	0	0	0	1	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0059	9979	1	0	0	1	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0060	9979	1	0	0	1	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0061	9978	1	1	0	0	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0062	9979	1	1	0	0	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0063	9979	1	0	1	0	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0064	9979	1	1	0	0	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0065	9979	1	0	1	0	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0066	9979	1	1	0	0	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	t0067	9979	1	0	0	1	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD3_chr2_86101235_86147157	0/0	t0001	4612	94	0	24	51	2	17	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/1	t0002	4614	58	3	20	24	4	6	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0003	4611	35	0	4	29	2	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0004	4610	25	0	0	24	0	1	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0005	4612	19	8	1	3	0	7	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0006	4610	13	13	0	0	0	0	copy fasta	PTCD3	chr2	86101235	86147157