JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTCD3_chr2_86101235_86147157	0/0	t0007	4611	11	0	0	11	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0008	4610	9	6	1	0	0	2	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0009	4613	7	0	0	7	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0010	4615	6	2	2	0	0	2	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0011	4615	6	0	0	5	0	1	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0012	4608	5	5	0	0	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0013	4613	5	0	2	3	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0014	4613	4	1	3	0	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0015	4612	4	4	0	0	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0016	4607	4	3	1	0	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0017	4607	4	3	1	0	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0018	4607	4	4	0	0	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0019	4609	4	3	1	0	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0020	4611	4	0	0	4	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0021	4614	4	0	3	0	0	1	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0022	4609	4	0	0	2	0	2	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0023	4591	3	3	0	0	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0024	4609	3	3	0	0	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0025	4608	3	2	1	0	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0026	4611	3	0	0	3	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0027	4609	3	0	2	0	1	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0028	4608	3	3	0	0	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0029	4608	2	1	1	0	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0030	4612	2	0	2	0	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0031	4614	2	0	0	2	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0032	4612	2	0	0	2	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0033	4613	2	0	0	2	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0034	4611	2	2	0	0	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0035	4612	2	0	0	2	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0036	4608	2	2	0	0	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0037	4615	1	0	0	0	0	1	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0038	4612	1	0	0	1	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0039	4612	1	0	0	0	1	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0040	4612	1	1	0	0	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0041	4612	1	1	0	0	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0042	4612	1	0	0	1	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0043	4615	1	1	0	0	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	1/0	t0044	4612	1	0	0	0	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0045	4607	1	1	0	0	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0046	4610	1	1	0	0	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0047	4616	1	0	0	1	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0048	4614	1	0	1	0	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0049	4614	1	0	0	1	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0050	4615	1	1	0	0	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0051	4609	1	1	0	0	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0052	4608	1	1	0	0	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0053	4607	1	1	0	0	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0054	4603	1	1	0	0	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0055	4603	1	1	0	0	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0056	4609	1	0	0	1	0	0	copy fasta	PTCD3	chr2	86101235	86147157