JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTCD3_chr2_86101235_86147157	0/0	t0057	4612	1	0	0	0	0	1	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0058	4612	1	0	0	1	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0059	4612	1	0	0	1	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0060	4610	1	0	0	1	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0061	4612	1	1	0	0	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0062	4611	1	1	0	0	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0063	4611	1	0	0	0	0	1	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0064	4610	1	0	0	1	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0065	4611	1	1	0	0	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0066	4614	1	1	0	0	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0067	4611	1	0	0	1	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0068	4611	1	1	0	0	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0069	4615	1	0	0	1	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0070	4607	1	1	0	0	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	t0071	4611	1	0	0	1	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCH1_chr9_95437980_95514266	1/1	t0001	4318	85	5	17	46	3	12	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0002	4321	41	5	3	25	2	6	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0003	4318	29	8	8	7	2	4	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0004	4324	23	1	4	14	2	2	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0005	4321	12	9	0	2	0	1	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0006	4321	9	6	1	2	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0007	4328	7	6	1	0	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0008	4320	6	6	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0009	4325	5	5	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0010	4319	5	5	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0011	4324	5	1	0	4	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0012	4315	4	2	2	0	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0013	4319	4	4	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0014	4322	3	0	0	3	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0015	4322	3	2	1	0	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0016	4319	2	2	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0017	4318	2	0	0	0	2	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0018	4324	2	2	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0019	4318	2	0	0	2	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0020	4319	2	2	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0021	4327	2	0	1	1	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0022	4306	2	0	0	1	0	1	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0023	4323	2	1	1	0	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0024	4321	2	0	0	2	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0025	4322	2	2	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0026	4318	1	0	0	1	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0027	4319	1	1	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0028	4329	1	1	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0029	4324	1	0	0	1	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0030	4320	1	1	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0031	4318	1	0	0	0	1	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0032	4318	1	0	0	1	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0033	4319	1	0	0	1	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0034	4319	1	0	1	0	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0035	4319	1	1	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95514266