JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTCH1_chr9_95437980_95514266	0/0	t0036	4321	1	1	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0037	4325	1	1	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0038	4319	1	0	1	0	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0039	4321	1	0	0	1	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0040	4321	1	1	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0041	4322	1	1	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0042	4327	1	0	0	1	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0043	4327	1	1	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0044	4307	1	0	0	1	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0045	4328	1	1	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0046	4321	1	0	1	0	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0047	4328	1	1	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	t0048	4321	1	1	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95521971	1/1	t0001	3564	117	10	19	67	4	15	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	t0002	3564	36	13	9	9	1	4	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	t0003	3570	24	1	5	14	2	2	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	t0004	3567	17	10	0	6	0	1	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	t0005	3566	8	7	1	0	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	t0006	3571	7	6	1	0	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	t0007	3565	6	5	0	0	0	1	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	t0008	3565	5	5	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	t0009	3571	5	5	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	t0010	3565	4	0	0	4	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	t0011	3565	4	2	2	0	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	t0012	3564	3	0	0	3	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	t0013	3561	3	1	2	0	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	t0014	3564	3	0	1	0	2	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	t0015	3549	2	0	0	1	0	1	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	t0016	3570	2	2	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	t0017	3563	2	0	0	2	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	t0018	3564	2	0	0	2	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	t0019	3564	2	0	0	2	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	t0020	3565	2	2	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	t0021	3565	2	2	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	t0022	3571	2	2	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	t0023	3565	2	2	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	t0024	3550	1	0	0	1	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	t0025	3564	1	0	0	1	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	t0026	3564	1	0	0	1	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	t0027	3564	1	1	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	t0028	3575	1	1	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	t0029	3570	1	0	0	1	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	t0030	3569	1	0	0	1	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	t0031	3570	1	0	0	1	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	t0032	3570	1	1	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	t0033	3564	1	0	1	0	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	t0034	3564	1	0	0	0	1	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	t0035	3564	1	0	0	1	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	t0036	3563	1	0	1	0	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	t0037	3564	1	1	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95521971