JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTCH1_chr9_95437980_95521971	0/0	t0038	3567	1	1	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	t0039	3565	1	0	1	0	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	t0040	3564	1	0	1	0	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	t0041	3564	1	0	0	1	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH2_chr1_44816938_44848253	1/1	t0001	799	362	84	59	163	16	38	copy fasta	PTCH2	chr1	44816938	44848253
PTCH2_chr1_44816938_44848253	0/0	t0002	799	3	3	0	0	0	0	copy fasta	PTCH2	chr1	44816938	44848253
PTCH2_chr1_44816938_44848253	0/0	t0003	799	1	1	0	0	0	0	copy fasta	PTCH2	chr1	44816938	44848253
PTCH2_chr1_44816938_44848253	0/0	t0004	799	1	0	1	0	0	0	copy fasta	PTCH2	chr1	44816938	44848253
PTCH2_chr1_44816938_44848253	0/0	t0005	799	1	1	0	0	0	0	copy fasta	PTCH2	chr1	44816938	44848253
PTCH2_chr1_44816938_44848253	0/0	t0006	799	1	1	0	0	0	0	copy fasta	PTCH2	chr1	44816938	44848253
PTCH2_chr1_44816938_44848253	0/0	t0007	799	1	0	0	1	0	0	copy fasta	PTCH2	chr1	44816938	44848253
PTCHD1_chrX_23329849_23409374	1/1	t0001	10217	20	0	7	5	0	6	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0002	10210	12	0	0	11	0	1	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0003	10217	10	0	0	10	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0004	10218	9	0	4	5	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0005	10230	7	0	1	6	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0006	10219	7	0	3	4	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0007	10228	6	1	0	5	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0008	10222	6	3	0	3	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0009	10221	6	1	3	0	0	2	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0010	10221	6	5	1	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0011	10232	5	0	1	3	1	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0012	10232	5	0	1	4	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0013	10217	5	0	0	5	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0014	10219	4	0	0	4	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0015	10218	3	1	0	2	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0016	10232	3	0	0	3	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0017	10226	3	0	2	1	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0018	10227	2	1	0	1	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0019	10223	2	0	0	1	0	1	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0020	10220	2	0	1	0	0	1	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0021	10236	2	0	1	0	0	1	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0022	10236	2	0	0	2	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0023	10231	2	0	0	2	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0024	10230	2	0	0	2	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0025	10224	2	0	0	2	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0026	10243	2	2	0	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0027	10225	2	0	1	0	0	1	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0028	10223	2	1	0	1	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0029	10225	2	0	2	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0030	10221	2	0	0	0	0	2	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0031	10221	2	2	0	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0032	10221	2	2	0	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0033	10219	2	2	0	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0034	10215	2	2	0	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0035	10215	2	2	0	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0036	10230	1	1	0	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0037	10222	1	0	0	1	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0038	10219	1	0	0	1	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0039	10225	1	1	0	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374