JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
PTCHD1_chrX_23329849_23409374	0/0	t0090	10224	1	1	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0091	10226	1	0	0	1	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0092	10225	1	0	0	1	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0093	10222	1	1	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0094	10227	1	1	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0095	10228	1	0	0	1	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0096	10224	1	0	1	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0097	10224	1	0	0	1	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0098	10224	1	1	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0099	10222	1	1	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0100	10227	1	1	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0101	10222	1	1	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0102	10231	1	0	0	0	1	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0103	10239	1	1	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0104	10227	1	1	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0105	10221	1	1	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0106	10227	1	1	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0107	10227	1	0	1	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0108	10221	1	1	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0109	10227	1	1	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0110	10229	1	0	0	1	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0111	10237	1	0	0	1	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0112	10235	1	1	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0113	10223	1	0	0	0	1	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0114	10224	1	1	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0115	10225	1	0	0	0	1	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0116	10219	1	0	1	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0117	10223	1	0	0	0	1	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0118	10223	1	1	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0119	10223	1	1	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0120	10219	1	0	1	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0121	10219	1	0	0	1	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0122	10219	1	0	0	1	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0123	10217	1	0	0	1	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0124	10218	1	0	1	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0125	10218	1	0	0	1	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0126	10221	1	1	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0127	10220	1	0	1	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0128	10216	1	1	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0129	10227	1	1	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0130	10213	1	1	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0131	10225	1	0	1	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0132	10218	1	1	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0133	10217	1	0	0	1	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0134	10219	1	0	0	1	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0135	10219	1	0	0	0	1	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0136	10216	1	0	0	1	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0137	10217	1	0	1	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0138	10216	1	0	0	1	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0139	10217	1	0	1	0	0	copy fasta	PTCHD1	chrX	23329849	23409374