JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTCHD1_chrX_23329849_23409374	0/0	t0140	10217	1	0	0	1	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0141	10218	1	0	0	1	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0142	10218	1	1	0	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0143	10215	1	0	1	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0144	10216	1	0	1	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0145	10212	1	0	0	0	0	1	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0146	10212	1	0	0	1	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0147	10211	1	0	0	1	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0148	10210	1	0	0	0	0	1	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0149	10211	1	0	0	0	0	1	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0150	10212	1	0	0	0	0	1	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0151	10212	1	0	0	1	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0152	10210	1	0	0	1	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0153	10211	1	0	0	0	0	1	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0154	10234	1	1	0	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0155	10228	1	1	0	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0156	10226	1	1	0	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0157	10209	1	1	0	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0158	10198	1	1	0	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0159	10222	1	0	0	1	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0160	10239	1	0	1	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0161	10225	1	1	0	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0162	10223	1	1	0	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0163	10223	1	0	1	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0164	10223	1	1	0	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0165	10221	1	1	0	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0166	10220	1	1	0	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0167	10221	1	1	0	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0168	10219	1	1	0	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0169	10219	1	1	0	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0170	10222	1	0	1	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0171	10219	1	0	0	1	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0172	10221	1	1	0	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0173	10217	1	1	0	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0174	10217	1	1	0	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0175	10215	1	1	0	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0176	10216	1	0	0	0	1	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0177	10213	1	1	0	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0178	10201	1	1	0	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	t0179	10217	1	1	0	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD4_chr6_47851673_48116197	0/0	t0001	22750	8	1	2	5	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0002	22750	5	0	3	2	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0003	22746	5	0	3	2	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0004	22750	5	1	2	1	0	1	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0005	22748	5	3	2	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0006	22749	4	0	1	0	2	1	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0007	22749	4	3	1	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0008	22747	4	0	1	3	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0009	22750	3	3	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0010	22744	3	0	3	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197