JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTCHD4_chr6_47851673_48116197	0/0	t0061	22748	1	0	0	0	1	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0062	22749	1	1	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0063	22746	1	0	0	1	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0064	22746	1	0	0	1	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0065	22746	1	0	0	1	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0066	22747	1	0	1	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0067	22746	1	0	0	1	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0068	22744	1	0	0	1	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0069	22748	1	1	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0070	22746	1	0	0	0	0	1	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0071	22753	1	1	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0072	22750	1	0	0	1	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0073	22751	1	1	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0074	22751	1	1	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0075	22748	1	0	0	1	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0076	22750	1	1	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0077	22750	1	1	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0078	22751	1	0	0	0	0	1	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0079	22746	1	1	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0080	22746	1	1	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0081	22744	1	0	0	1	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0082	22744	1	0	0	1	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0083	22750	1	0	0	0	1	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0084	22750	1	0	0	0	1	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0085	22750	1	0	0	0	0	1	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0086	22752	1	0	1	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0087	22750	1	0	0	0	1	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0088	22750	1	1	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0089	22750	1	0	0	0	1	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0090	22750	1	0	1	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0091	22750	1	1	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0092	22750	1	1	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0093	22750	1	1	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0094	22750	1	1	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0095	22748	1	1	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0096	22747	1	1	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0097	22747	1	1	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0098	22788	1	0	0	0	0	1	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0099	22749	1	1	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0100	22750	1	1	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0101	22749	1	0	0	1	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0102	22749	1	0	0	0	0	1	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0103	22749	1	1	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0104	22749	1	1	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0105	22749	1	0	1	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0106	22749	1	1	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0107	22749	1	1	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0108	22749	1	1	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0109	22745	1	0	1	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0110	22751	1	1	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197