Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATP8B1_chr18_57641426_57808315	0/0	t0042	2405	1	0	0	0	0	1	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0043	2406	1	0	0	1	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0044	2406	1	0	0	1	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0045	2406	1	1	0	0	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0046	2406	1	1	0	0	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0047	2406	1	1	0	0	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0048	2406	1	1	0	0	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0049	2406	1	1	0	0	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B1_chr18_57641426_57808315	0/0	t0050	2405	1	1	0	0	0	0	copy fasta	ATP8B1	chr18	57641426	57808315
ATP8B2_chr1_154320525_154356304	0/0	t0001	2401	124	12	27	71	3	11	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	t0002	2404	66	13	6	35	4	8	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	t0003	2404	63	8	16	28	4	7	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	1/0	t0004	2402	40	39	0	0	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	t0005	2402	36	2	7	16	1	10	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	t0006	2404	10	3	1	5	0	1	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	t0007	2404	7	5	2	0	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	t0008	2406	6	0	5	0	0	1	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	t0009	2404	6	4	2	0	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	t0010	2401	2	0	2	0	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	t0011	2402	2	2	0	0	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	t0012	2401	1	0	1	0	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/1	t0013	2401	1	0	0	0	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	t0014	2401	1	0	0	1	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	t0015	2401	1	0	0	1	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	t0016	2404	1	0	0	1	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	t0017	2402	1	0	0	0	0	1	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	t0018	2402	1	0	0	1	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	t0019	2404	1	0	0	1	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	t0020	2402	1	0	0	0	0	1	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	t0021	2396	1	0	0	1	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	t0022	2402	1	0	0	1	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	t0023	2401	1	1	0	0	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	t0024	2402	1	1	0	0	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	t0025	2404	1	0	0	1	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	t0026	2406	1	1	0	0	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	t0027	2402	1	0	1	0	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	t0028	2403	1	1	0	0	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	t0029	2403	1	0	0	1	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	t0030	2405	1	0	1	0	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B2_chr1_154320525_154356304	0/0	t0031	2405	1	0	1	0	0	0	copy fasta	ATP8B2	chr1	154320525	154356304
ATP8B3_chr19_1777075_1817276	0/0	t0001	1193	75	9	23	27	2	14	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	t0002	1193	74	12	13	34	5	10	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	1/0	t0003	1193	55	12	6	29	4	3	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	t0004	1193	53	12	11	25	1	4	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/1	t0005	1193	41	14	8	14	0	4	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	t0006	1193	37	4	10	15	1	7	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	t0007	1193	19	10	4	0	1	4	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	t0008	1193	8	8	0	0	0	0	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	t0009	1193	6	6	0	0	0	0	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	t0010	1193	5	0	5	0	0	0	copy fasta	ATP8B3	chr19	1777075	1817276