JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTCHD4_chr6_47851673_48116197	0/0	t0111	22751	1	0	0	1	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0112	22751	1	1	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0113	22751	1	0	1	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0114	22750	1	0	0	1	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0115	22752	1	1	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0116	22753	1	1	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0117	22750	1	1	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0118	22750	1	1	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0119	22772	1	1	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0120	22749	1	1	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0121	22749	1	0	1	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0122	22749	1	1	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0123	22749	1	1	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0124	22751	1	1	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	t0125	22744	1	0	1	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCRA_chr6_42911053_42930838	1/1	t0001	174	400	84	78	184	14	38	copy fasta	PTCRA	chr6	42911053	42930838
PTCRA_chr6_42911053_42930838	0/0	t0002	174	12	12	0	0	0	0	copy fasta	PTCRA	chr6	42911053	42930838
PTDSS1_chr8_96256902_96341995	0/0	t0001	3569	73	3	21	33	4	12	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS1_chr8_96256902_96341995	0/1	t0002	3569	47	23	14	0	2	7	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS1_chr8_96256902_96341995	1/0	t0003	3569	35	1	3	24	2	4	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS1_chr8_96256902_96341995	0/0	t0004	3569	15	14	1	0	0	0	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS1_chr8_96256902_96341995	0/0	t0005	3569	15	2	2	4	2	5	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS1_chr8_96256902_96341995	0/0	t0006	3569	9	2	1	5	0	1	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS1_chr8_96256902_96341995	0/0	t0007	3569	7	6	1	0	0	0	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS1_chr8_96256902_96341995	0/0	t0008	3569	7	7	0	0	0	0	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS1_chr8_96256902_96341995	0/0	t0009	3569	5	4	1	0	0	0	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS1_chr8_96256902_96341995	0/0	t0010	3569	4	3	1	0	0	0	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS1_chr8_96256902_96341995	0/0	t0011	3569	4	4	0	0	0	0	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS1_chr8_96256902_96341995	0/0	t0012	2592	4	3	1	0	0	0	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS1_chr8_96256902_96341995	0/0	t0013	3569	4	1	1	0	2	0	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS1_chr8_96256902_96341995	0/0	t0014	3569	4	1	1	2	0	0	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS1_chr8_96256902_96341995	0/0	t0015	3569	2	0	2	0	0	0	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS1_chr8_96256902_96341995	0/0	t0016	3569	2	2	0	0	0	0	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS1_chr8_96256902_96341995	0/0	t0017	3569	2	1	1	0	0	0	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS1_chr8_96256902_96341995	0/0	t0018	3569	2	2	0	0	0	0	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS1_chr8_96256902_96341995	0/0	t0019	3569	2	0	0	2	0	0	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS1_chr8_96256902_96341995	0/0	t0020	3569	1	0	1	0	0	0	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS1_chr8_96256902_96341995	0/0	t0021	3569	1	0	0	1	0	0	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS1_chr8_96256902_96341995	0/0	t0022	3569	1	1	0	0	0	0	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS1_chr8_96256902_96341995	0/0	t0023	3569	1	1	0	0	0	0	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS1_chr8_96256902_96341995	0/0	t0024	3569	1	0	1	0	0	0	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS1_chr8_96256902_96341995	0/0	t0025	3569	1	1	0	0	0	0	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS1_chr8_96256902_96341995	0/0	t0026	3569	1	0	1	0	0	0	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS1_chr8_96256902_96341995	0/0	t0027	3569	1	1	0	0	0	0	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS1_chr8_96256902_96341995	0/0	t0028	3569	1	0	1	0	0	0	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS1_chr8_96256902_96341995	0/0	t0029	3569	1	1	0	0	0	0	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS1_chr8_96256902_96341995	0/0	t0030	3569	1	1	0	0	0	0	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS1_chr8_96256902_96341995	0/0	t0031	3569	1	1	0	0	0	0	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS1_chr8_96256902_96341995	0/0	t0032	3569	1	1	0	0	0	0	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS1_chr8_96256902_96341995	0/0	t0033	3569	1	1	0	0	0	0	copy fasta	PTDSS1	chr8	96256902	96341995