JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTDSS1_chr8_96256902_96341995	0/0	t0034	3569	1	1	0	0	0	0	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS1_chr8_96256902_96341995	0/0	t0035	3569	1	1	0	0	0	0	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS1_chr8_96256902_96341995	0/0	t0036	3569	1	0	0	1	0	0	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS1_chr8_96256902_96341995	0/0	t0037	3569	1	0	0	0	0	1	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS1_chr8_96256902_96341995	0/0	t0038	3569	1	0	1	0	0	0	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS2_chr11_445279_496399	1/0	t0001	995	214	48	55	75	10	25	copy fasta	PTDSS2	chr11	445279	496399
PTDSS2_chr11_445279_496399	0/0	t0002	1005	70	28	13	19	5	5	copy fasta	PTDSS2	chr11	445279	496399
PTDSS2_chr11_445279_496399	0/0	t0003	995	14	6	0	8	0	0	copy fasta	PTDSS2	chr11	445279	496399
PTDSS2_chr11_445279_496399	0/0	t0004	995	11	11	0	0	0	0	copy fasta	PTDSS2	chr11	445279	496399
PTDSS2_chr11_445279_496399	0/0	t0005	1015	11	0	10	0	1	0	copy fasta	PTDSS2	chr11	445279	496399
PTDSS2_chr11_445279_496399	0/1	t0006	1015	5	0	3	0	0	1	copy fasta	PTDSS2	chr11	445279	496399
PTDSS2_chr11_445279_496399	0/0	t0007	1005	4	0	0	1	0	3	copy fasta	PTDSS2	chr11	445279	496399
PTDSS2_chr11_445279_496399	0/0	t0008	1017	4	0	4	0	0	0	copy fasta	PTDSS2	chr11	445279	496399
PTDSS2_chr11_445279_496399	0/0	t0009	1005	3	0	0	3	0	0	copy fasta	PTDSS2	chr11	445279	496399
PTDSS2_chr11_445279_496399	0/0	t0010	1017	2	2	0	0	0	0	copy fasta	PTDSS2	chr11	445279	496399
PTDSS2_chr11_445279_496399	0/0	t0011	995	2	0	0	2	0	0	copy fasta	PTDSS2	chr11	445279	496399
PTDSS2_chr11_445279_496399	0/0	t0012	995	1	0	1	0	0	0	copy fasta	PTDSS2	chr11	445279	496399
PTDSS2_chr11_445279_496399	0/0	t0013	995	1	1	0	0	0	0	copy fasta	PTDSS2	chr11	445279	496399
PTDSS2_chr11_445279_496399	0/0	t0014	995	1	0	0	0	0	1	copy fasta	PTDSS2	chr11	445279	496399
PTDSS2_chr11_445279_496399	0/0	t0015	995	1	0	0	0	0	1	copy fasta	PTDSS2	chr11	445279	496399
PTDSS2_chr11_445279_496399	0/0	t0016	1005	1	0	0	1	0	0	copy fasta	PTDSS2	chr11	445279	496399
PTDSS2_chr11_445279_496399	0/0	t0017	1005	1	0	0	1	0	0	copy fasta	PTDSS2	chr11	445279	496399
PTEN_chr10_87858625_87976930	0/0	t0001	7301	59	1	14	43	1	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0002	7303	28	0	3	24	1	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0003	7301	20	17	3	0	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0004	7304	16	1	1	9	1	4	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0005	7302	13	2	4	5	0	2	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/1	t0006	7302	13	2	4	4	1	1	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0007	7298	9	0	1	7	0	1	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0008	7302	7	0	0	7	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0009	7303	5	3	0	2	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0010	7303	5	0	3	1	1	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0011	7306	4	0	3	1	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0012	7299	4	2	1	0	0	1	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0013	7301	4	0	0	4	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0014	7301	4	0	3	0	0	1	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0015	7302	4	4	0	0	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0016	7290	3	0	0	3	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0017	7302	3	0	1	2	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0018	7305	3	0	2	1	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0019	7303	3	0	0	3	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0020	7298	3	0	0	0	1	2	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0021	7300	3	3	0	0	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0022	7302	3	0	2	0	0	1	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0023	7303	3	3	0	0	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0024	7302	3	0	1	1	0	1	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0025	7304	3	0	2	0	0	1	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0026	7298	3	3	0	0	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0027	7302	2	0	0	0	0	2	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0028	7302	2	2	0	0	0	0	copy fasta	PTEN	chr10	87858625	87976930