JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
PTEN_chr10_87858625_87976930	0/0	t0029	7301	2	2	0	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0030	7303	2	1	0	1	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0031	7302	2	2	0	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0032	7303	2	2	0	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0033	7302	2	0	0	2	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0034	7304	2	2	0	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0035	7299	2	2	0	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0036	7301	2	0	0	0	2	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0037	7301	1	1	0	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0038	7303	1	1	0	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0039	7306	1	0	0	1	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0040	7298	1	0	0	1	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0041	7299	1	0	0	1	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0042	7302	1	0	0	1	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0043	7302	1	0	0	1	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0044	7304	1	0	0	1	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0045	7303	1	0	0	1	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0046	7303	1	0	0	1	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0047	7305	1	0	0	1	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0048	7304	1	0	0	1	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0049	7303	1	0	0	1	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0050	7304	1	0	1	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0051	7306	1	1	0	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0052	7305	1	0	1	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0053	7307	1	0	0	1	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0054	7306	1	0	1	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0055	7302	1	0	0	1	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0056	7305	1	0	0	1	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0057	7302	1	0	0	1	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0058	7303	1	0	0	1	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0059	7302	1	0	0	1	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0060	7301	1	0	0	1	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0061	7301	1	1	0	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0062	7302	1	1	0	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0063	7302	1	1	0	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0064	7300	1	0	0	0	1	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0065	7300	1	1	0	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0066	7302	1	0	0	1	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0067	7301	1	0	0	1	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0068	7301	1	0	0	1	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0069	7301	1	0	0	1	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0070	7301	1	0	0	1	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0071	7301	1	0	1	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0072	7300	1	0	0	1	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0073	7301	1	1	0	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0074	7301	1	1	0	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0075	7301	1	1	0	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0076	7301	1	1	0	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0077	7303	1	1	0	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0078	7303	1	1	0	0	0	copy fasta	PTEN	chr10	87858625	87976930