JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTEN_chr10_87858625_87976930	0/0	t0079	7302	1	0	0	1	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0080	7301	1	0	0	1	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0081	7301	1	0	1	0	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0082	7301	1	1	0	0	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0083	7302	1	1	0	0	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0084	7304	1	1	0	0	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0085	7302	1	0	0	0	1	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0086	7304	1	1	0	0	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0087	7303	1	0	0	1	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0088	7303	1	0	1	0	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0089	7304	1	1	0	0	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0090	7302	1	0	1	0	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0091	7304	1	0	0	1	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0092	7304	1	0	0	0	0	1	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0093	7301	1	0	0	1	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0094	7303	1	0	0	0	1	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0095	7302	1	0	1	0	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0096	7304	1	0	1	0	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0097	7305	1	0	1	0	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0098	7304	1	0	1	0	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0099	7303	1	0	0	1	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0100	7303	1	0	1	0	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0101	7304	1	1	0	0	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0102	7305	1	1	0	0	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0103	7305	1	1	0	0	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0104	7301	1	1	0	0	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0105	7303	1	0	0	0	0	1	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0106	7305	1	1	0	0	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0107	7306	1	1	0	0	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0108	7302	1	0	0	1	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	1/0	t0109	7304	1	0	0	0	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	t0110	7302	1	0	0	1	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTER_chr10_16432010_16518745	1/0	t0001	2576	125	10	16	83	4	11	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/1	t0002	2575	76	21	19	18	3	14	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	t0003	2575	54	5	1	39	0	9	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	t0004	2575	30	0	7	17	4	2	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	t0005	2575	13	10	1	2	0	0	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	t0006	2575	8	8	0	0	0	0	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	t0007	2577	7	1	1	1	1	3	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	t0008	2575	7	2	3	1	0	1	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	t0009	2577	6	6	0	0	0	0	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	t0010	2576	6	6	0	0	0	0	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	t0011	2576	6	0	0	6	0	0	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	t0012	2575	5	0	0	5	0	0	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	t0013	2575	2	2	0	0	0	0	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	t0014	2576	2	0	0	2	0	0	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	t0015	2576	2	2	0	0	0	0	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	t0016	2575	2	2	0	0	0	0	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	t0017	2577	2	2	0	0	0	0	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	t0018	2573	1	1	0	0	0	0	copy fasta	PTER	chr10	16432010	16518745