JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTER_chr10_16432010_16518745	0/0	t0019	2573	1	1	0	0	0	0	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	t0020	2576	1	0	0	1	0	0	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	t0021	2576	1	1	0	0	0	0	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	t0022	2575	1	1	0	0	0	0	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	t0023	2574	1	0	1	0	0	0	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	t0024	2577	1	1	0	0	0	0	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	t0025	2575	1	0	0	1	0	0	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	t0026	2575	1	0	0	1	0	0	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	t0027	2576	1	0	1	0	0	0	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	t0028	2576	1	0	0	1	0	0	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	t0029	2576	1	1	0	0	0	0	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	t0030	2576	1	0	1	0	0	0	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	t0031	2574	1	0	1	0	0	0	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	t0032	2576	1	0	0	1	0	0	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	t0033	2576	1	1	0	0	0	0	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	t0034	2575	1	0	0	1	0	0	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	t0035	2575	1	0	0	1	0	0	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	t0036	2575	1	0	0	1	0	0	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	t0037	2574	1	1	0	0	0	0	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	t0038	2575	1	1	0	0	0	0	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	t0039	2576	1	0	0	1	0	0	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	t0040	2575	1	0	0	1	0	0	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	t0041	2575	1	1	0	0	0	0	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	t0042	2573	1	1	0	0	0	0	copy fasta	PTER	chr10	16432010	16518745
PTF1A_chr10_23187312_23199245	1/1	t0001	559	197	61	55	45	10	24	copy fasta	PTF1A	chr10	23187312	23199245
PTF1A_chr10_23187312_23199245	0/0	t0002	559	125	12	7	97	1	8	copy fasta	PTF1A	chr10	23187312	23199245
PTF1A_chr10_23187312_23199245	0/0	t0003	556	57	12	6	25	3	11	copy fasta	PTF1A	chr10	23187312	23199245
PTF1A_chr10_23187312_23199245	0/0	t0004	559	14	11	3	0	0	0	copy fasta	PTF1A	chr10	23187312	23199245
PTF1A_chr10_23187312_23199245	0/0	t0005	559	10	0	0	6	0	4	copy fasta	PTF1A	chr10	23187312	23199245
PTF1A_chr10_23187312_23199245	0/0	t0006	559	2	0	0	0	2	0	copy fasta	PTF1A	chr10	23187312	23199245
PTF1A_chr10_23187312_23199245	0/0	t0007	559	1	0	1	0	0	0	copy fasta	PTF1A	chr10	23187312	23199245
PTF1A_chr10_23187312_23199245	0/0	t0008	559	1	1	0	0	0	0	copy fasta	PTF1A	chr10	23187312	23199245
PTF1A_chr10_23187312_23199245	0/0	t0009	556	1	0	0	0	0	1	copy fasta	PTF1A	chr10	23187312	23199245
PTF1A_chr10_23187312_23199245	0/0	t0010	556	1	1	0	0	0	0	copy fasta	PTF1A	chr10	23187312	23199245
PTF1A_chr10_23187312_23199245	0/0	t0011	559	1	0	0	1	0	0	copy fasta	PTF1A	chr10	23187312	23199245
PTGDR2_chr11_60845933_60860950	0/0	t0001	1694	156	9	23	94	7	23	copy fasta	PTGDR2	chr11	60845933	60860950
PTGDR2_chr11_60845933_60860950	1/0	t0002	1694	87	33	24	18	3	8	copy fasta	PTGDR2	chr11	60845933	60860950
PTGDR2_chr11_60845933_60860950	0/1	t0003	1694	81	22	18	27	4	9	copy fasta	PTGDR2	chr11	60845933	60860950
PTGDR2_chr11_60845933_60860950	0/0	t0004	1694	36	10	10	12	2	2	copy fasta	PTGDR2	chr11	60845933	60860950
PTGDR2_chr11_60845933_60860950	0/0	t0005	1694	14	0	0	14	0	0	copy fasta	PTGDR2	chr11	60845933	60860950
PTGDR2_chr11_60845933_60860950	0/0	t0006	1694	14	13	1	0	0	0	copy fasta	PTGDR2	chr11	60845933	60860950
PTGDR2_chr11_60845933_60860950	0/0	t0007	1694	4	4	0	0	0	0	copy fasta	PTGDR2	chr11	60845933	60860950
PTGDR2_chr11_60845933_60860950	0/0	t0008	1694	3	0	0	3	0	0	copy fasta	PTGDR2	chr11	60845933	60860950
PTGDR2_chr11_60845933_60860950	0/0	t0009	1694	2	2	0	0	0	0	copy fasta	PTGDR2	chr11	60845933	60860950
PTGDR2_chr11_60845933_60860950	0/0	t0010	1694	1	0	0	0	0	1	copy fasta	PTGDR2	chr11	60845933	60860950
PTGDR2_chr11_60845933_60860950	0/0	t0011	1694	1	0	0	1	0	0	copy fasta	PTGDR2	chr11	60845933	60860950
PTGDR2_chr11_60845933_60860950	0/0	t0012	1694	1	1	0	0	0	0	copy fasta	PTGDR2	chr11	60845933	60860950
PTGDR2_chr11_60845933_60860950	0/0	t0013	1694	1	1	0	0	0	0	copy fasta	PTGDR2	chr11	60845933	60860950
PTGDR2_chr11_60845933_60860950	0/0	t0014	1694	1	0	0	1	0	0	copy fasta	PTGDR2	chr11	60845933	60860950
PTGDR2_chr11_60845933_60860950	0/0	t0015	1694	1	1	0	0	0	0	copy fasta	PTGDR2	chr11	60845933	60860950