JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTGDR2_chr11_60845933_60860950	0/0	t0016	1694	1	0	0	1	0	0	copy fasta	PTGDR2	chr11	60845933	60860950
PTGDR2_chr11_60845933_60860950	0/0	t0017	1694	1	0	0	1	0	0	copy fasta	PTGDR2	chr11	60845933	60860950
PTGDR2_chr11_60845933_60860950	0/0	t0018	1694	1	0	0	0	0	1	copy fasta	PTGDR2	chr11	60845933	60860950
PTGDR_chr14_52262698_52281724	1/0	t0001	1878	207	30	30	128	2	16	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/0	t0002	1878	97	36	17	24	7	13	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/0	t0003	1878	30	0	5	17	1	7	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/1	t0004	1878	30	4	15	0	6	4	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/0	t0005	1878	20	16	3	0	0	1	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/0	t0006	1878	11	0	3	8	0	0	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/0	t0007	1878	6	1	0	5	0	0	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/0	t0008	1878	4	0	0	4	0	0	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/0	t0009	1878	4	0	0	4	0	0	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/0	t0010	1878	4	0	2	0	2	0	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/0	t0011	1878	3	3	0	0	0	0	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/0	t0012	1878	3	0	3	0	0	0	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/0	t0013	1878	2	0	0	2	0	0	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/0	t0014	1878	2	2	0	0	0	0	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/0	t0015	1878	2	0	2	0	0	0	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/0	t0016	1878	1	1	0	0	0	0	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/0	t0017	1917	1	0	0	1	0	0	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/0	t0018	1878	1	0	0	1	0	0	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/0	t0019	1878	1	1	0	0	0	0	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/0	t0020	1878	1	1	0	0	0	0	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/0	t0021	1878	1	1	0	0	0	0	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/0	t0022	1878	1	1	0	0	0	0	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/0	t0023	1878	1	0	1	0	0	0	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/0	t0024	1878	1	0	1	0	0	0	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/0	t0025	1878	1	1	0	0	0	0	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/0	t0026	1878	1	0	0	0	0	1	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/0	t0027	1878	1	0	0	1	0	0	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/0	t0028	1878	1	0	0	1	0	0	copy fasta	PTGDR	chr14	52262698	52281724
PTGDS_chr9_136972504_136986742	0/1	t0001	240	282	71	46	121	9	34	copy fasta	PTGDS	chr9	136972504	136986742
PTGDS_chr9_136972504_136986742	0/0	t0002	240	88	14	24	34	4	12	copy fasta	PTGDS	chr9	136972504	136986742
PTGDS_chr9_136972504_136986742	1/0	t0003	240	11	9	0	0	1	0	copy fasta	PTGDS	chr9	136972504	136986742
PTGDS_chr9_136972504_136986742	0/0	t0004	240	1	0	0	1	0	0	copy fasta	PTGDS	chr9	136972504	136986742
PTGER1_chr19_14467466_14480354	1/1	t0001	205	377	79	71	165	16	44	copy fasta	PTGER1	chr19	14467466	14480354
PTGER1_chr19_14467466_14480354	0/0	t0002	205	17	5	9	1	2	0	copy fasta	PTGER1	chr19	14467466	14480354
PTGER1_chr19_14467466_14480354	0/0	t0003	205	6	6	0	0	0	0	copy fasta	PTGER1	chr19	14467466	14480354
PTGER1_chr19_14467466_14480354	0/0	t0004	205	5	0	0	5	0	0	copy fasta	PTGER1	chr19	14467466	14480354
PTGER1_chr19_14467466_14480354	0/0	t0005	205	1	1	0	0	0	0	copy fasta	PTGER1	chr19	14467466	14480354
PTGER1_chr19_14467466_14480354	0/0	t0006	205	1	1	0	0	0	0	copy fasta	PTGER1	chr19	14467466	14480354
PTGER1_chr19_14467466_14480354	0/0	t0007	205	1	0	0	1	0	0	copy fasta	PTGER1	chr19	14467466	14480354
PTGER2_chr14_52309312_52333598	0/1	t0001	1382	151	18	36	68	10	18	copy fasta	PTGER2	chr14	52309312	52333598
PTGER2_chr14_52309312_52333598	0/0	t0002	1378	109	10	17	65	2	15	copy fasta	PTGER2	chr14	52309312	52333598
PTGER2_chr14_52309312_52333598	0/0	t0003	1382	79	14	9	50	0	6	copy fasta	PTGER2	chr14	52309312	52333598
PTGER2_chr14_52309312_52333598	0/0	t0004	1382	22	13	7	0	2	0	copy fasta	PTGER2	chr14	52309312	52333598
PTGER2_chr14_52309312_52333598	1/0	t0005	1382	17	4	3	9	0	0	copy fasta	PTGER2	chr14	52309312	52333598
PTGER2_chr14_52309312_52333598	0/0	t0006	1378	14	14	0	0	0	0	copy fasta	PTGER2	chr14	52309312	52333598
PTGER2_chr14_52309312_52333598	0/0	t0007	1382	8	6	2	0	0	0	copy fasta	PTGER2	chr14	52309312	52333598
PTGER2_chr14_52309312_52333598	0/0	t0008	1382	7	6	0	1	0	0	copy fasta	PTGER2	chr14	52309312	52333598