JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTGER2_chr14_52309312_52333598	0/0	t0009	1382	2	2	0	0	0	0	copy fasta	PTGER2	chr14	52309312	52333598
PTGER2_chr14_52309312_52333598	0/0	t0010	1378	2	0	0	0	0	2	copy fasta	PTGER2	chr14	52309312	52333598
PTGER2_chr14_52309312_52333598	0/0	t0011	1382	1	1	0	0	0	0	copy fasta	PTGER2	chr14	52309312	52333598
PTGER2_chr14_52309312_52333598	0/0	t0012	1382	1	1	0	0	0	0	copy fasta	PTGER2	chr14	52309312	52333598
PTGER2_chr14_52309312_52333598	0/0	t0013	1378	1	0	1	0	0	0	copy fasta	PTGER2	chr14	52309312	52333598
PTGER2_chr14_52309312_52333598	0/0	t0014	1382	1	0	1	0	0	0	copy fasta	PTGER2	chr14	52309312	52333598
PTGER2_chr14_52309312_52333598	0/0	t0015	1382	1	0	0	0	0	1	copy fasta	PTGER2	chr14	52309312	52333598
PTGER2_chr14_52309312_52333598	0/0	t0016	1378	1	1	0	0	0	0	copy fasta	PTGER2	chr14	52309312	52333598
PTGER2_chr14_52309312_52333598	0/0	t0017	1382	1	0	0	1	0	0	copy fasta	PTGER2	chr14	52309312	52333598
PTGER3_chr1_70965782_71052816	1/0	t0001	1188	265	49	48	126	11	30	copy fasta	PTGER3	chr1	70965782	71052816
PTGER3_chr1_70965782_71052816	0/1	t0002	1188	91	28	13	43	1	5	copy fasta	PTGER3	chr1	70965782	71052816
PTGER3_chr1_70965782_71052816	0/0	t0003	1188	7	0	3	0	1	3	copy fasta	PTGER3	chr1	70965782	71052816
PTGER3_chr1_70965782_71052816	0/0	t0004	1188	2	2	0	0	0	0	copy fasta	PTGER3	chr1	70965782	71052816
PTGER3_chr1_70965782_71052816	0/0	t0005	1188	2	2	0	0	0	0	copy fasta	PTGER3	chr1	70965782	71052816
PTGER3_chr1_70965782_71052816	0/0	t0006	1188	1	1	0	0	0	0	copy fasta	PTGER3	chr1	70965782	71052816
PTGER3_chr1_70965782_71052816	0/0	t0007	1188	1	1	0	0	0	0	copy fasta	PTGER3	chr1	70965782	71052816
PTGER3_chr1_70965782_71052816	0/0	t0008	1188	1	0	0	0	1	0	copy fasta	PTGER3	chr1	70965782	71052816
PTGER3_chr1_70965782_71052816	0/0	t0009	1188	1	0	0	1	0	0	copy fasta	PTGER3	chr1	70965782	71052816
PTGER3_chr1_70965782_71052816	0/0	t0010	1188	1	1	0	0	0	0	copy fasta	PTGER3	chr1	70965782	71052816
PTGER4_chr5_40674915_40698735	1/0	t0001	1965	319	83	71	111	13	40	copy fasta	PTGER4	chr5	40674915	40698735
PTGER4_chr5_40674915_40698735	0/1	t0002	1965	50	0	8	34	2	5	copy fasta	PTGER4	chr5	40674915	40698735
PTGER4_chr5_40674915_40698735	0/0	t0003	1965	15	1	3	11	0	0	copy fasta	PTGER4	chr5	40674915	40698735
PTGER4_chr5_40674915_40698735	0/0	t0004	1965	11	0	0	11	0	0	copy fasta	PTGER4	chr5	40674915	40698735
PTGER4_chr5_40674915_40698735	0/0	t0005	1965	3	3	0	0	0	0	copy fasta	PTGER4	chr5	40674915	40698735
PTGER4_chr5_40674915_40698735	0/0	t0006	1965	1	1	0	0	0	0	copy fasta	PTGER4	chr5	40674915	40698735
PTGER4_chr5_40674915_40698735	0/0	t0007	1965	1	0	0	1	0	0	copy fasta	PTGER4	chr5	40674915	40698735
PTGER4_chr5_40674915_40698735	0/0	t0008	1965	1	0	0	1	0	0	copy fasta	PTGER4	chr5	40674915	40698735
PTGER4_chr5_40674915_40698735	0/0	t0009	1965	1	0	0	0	1	0	copy fasta	PTGER4	chr5	40674915	40698735
PTGER4_chr5_40674915_40698735	0/0	t0010	1965	1	0	0	0	0	1	copy fasta	PTGER4	chr5	40674915	40698735
PTGER4_chr5_40674915_40698735	0/0	t0011	1965	1	1	0	0	0	0	copy fasta	PTGER4	chr5	40674915	40698735
PTGER4_chr5_40674915_40698735	0/0	t0012	1965	1	1	0	0	0	0	copy fasta	PTGER4	chr5	40674915	40698735
PTGER4_chr5_40674915_40698735	0/0	t0013	1965	1	0	0	1	0	0	copy fasta	PTGER4	chr5	40674915	40698735
PTGES2_chr9_128115693_128132729	1/1	t0001	465	363	89	74	144	14	40	copy fasta	PTGES2	chr9	128115693	128132729
PTGES2_chr9_128115693_128132729	0/0	t0002	465	1	1	0	0	0	0	copy fasta	PTGES2	chr9	128115693	128132729
PTGES2_chr9_128115693_128132729	0/0	t0003	465	1	0	0	1	0	0	copy fasta	PTGES2	chr9	128115693	128132729
PTGES2_chr9_128115693_128132729	0/0	t0004	465	1	0	0	1	0	0	copy fasta	PTGES2	chr9	128115693	128132729
PTGES3L_chr17_42963103_42985080	1/1	t0001	1073	258	72	56	86	11	31	copy fasta	PTGES3L	chr17	42963103	42985080
PTGES3L_chr17_42963103_42985080	0/0	t0002	1073	75	17	14	29	5	10	copy fasta	PTGES3L	chr17	42963103	42985080
PTGES3L_chr17_42963103_42985080	0/0	t0003	1073	1	0	0	0	0	1	copy fasta	PTGES3L	chr17	42963103	42985080
PTGES3L_chr17_42963103_42985080	0/0	t0004	1073	1	1	0	0	0	0	copy fasta	PTGES3L	chr17	42963103	42985080
PTGES3L_chr17_42963103_42985080	0/0	t0005	1073	1	0	0	1	0	0	copy fasta	PTGES3L	chr17	42963103	42985080
PTGES3_chr12_56658349_56693284	1/0	t0001	1416	325	66	57	157	11	33	copy fasta	PTGES3	chr12	56658349	56693284
PTGES3_chr12_56658349_56693284	0/1	t0002	1427	18	7	6	0	4	0	copy fasta	PTGES3	chr12	56658349	56693284
PTGES3_chr12_56658349_56693284	0/0	t0003	1416	8	2	5	0	1	0	copy fasta	PTGES3	chr12	56658349	56693284
PTGES3_chr12_56658349_56693284	0/0	t0004	1414	6	5	1	0	0	0	copy fasta	PTGES3	chr12	56658349	56693284
PTGES3_chr12_56658349_56693284	0/0	t0005	1416	4	4	0	0	0	0	copy fasta	PTGES3	chr12	56658349	56693284
PTGES3_chr12_56658349_56693284	0/0	t0006	1416	3	0	0	3	0	0	copy fasta	PTGES3	chr12	56658349	56693284
PTGES3_chr12_56658349_56693284	0/0	t0007	1416	2	2	0	0	0	0	copy fasta	PTGES3	chr12	56658349	56693284
PTGES3_chr12_56658349_56693284	0/0	t0008	1416	2	2	0	0	0	0	copy fasta	PTGES3	chr12	56658349	56693284
PTGES3_chr12_56658349_56693284	0/0	t0009	1416	1	0	0	0	0	1	copy fasta	PTGES3	chr12	56658349	56693284